Literature DB >> 28596378

Molecular definitions of autophagy and related processes.

Lorenzo Galluzzi1,2, Eric H Baehrecke3, Andrea Ballabio4,5,6,7, Patricia Boya8, José Manuel Bravo-San Pedro2,9,10,11,12, Francesco Cecconi13,14,15, Augustine M Choi16, Charleen T Chu17, Patrice Codogno2,18,19,20, Maria Isabel Colombo21,22, Ana Maria Cuervo23, Jayanta Debnath24, Vojo Deretic25, Ivan Dikic26,27,28, Eeva-Liisa Eskelinen29, Gian Maria Fimia30,31, Simone Fulda32,33,34, David A Gewirtz35,36, Douglas R Green37, Malene Hansen38, J Wade Harper39, Marja Jäättelä40, Terje Johansen41, Gabor Juhasz42,43, Alec C Kimmelman44, Claudine Kraft45, Nicholas T Ktistakis46, Sharad Kumar47, Beth Levine48,49, Carlos Lopez-Otin50,51, Frank Madeo52,53, Sascha Martens45, Jennifer Martinez54, Alicia Melendez55,56, Noboru Mizushima57, Christian Münz58, Leon O Murphy59, Josef M Penninger60, Mauro Piacentini13,30, Fulvio Reggiori61, David C Rubinsztein62, Kevin M Ryan63, Laura Santambrogio64, Luca Scorrano65,66, Anna Katharina Simon67,68, Hans-Uwe Simon69, Anne Simonsen70, Nektarios Tavernarakis71,72, Sharon A Tooze73, Tamotsu Yoshimori74,75, Junying Yuan39,76, Zhenyu Yue77, Qing Zhong48, Guido Kroemer2,9,10,11,12,78,79.   

Abstract

Over the past two decades, the molecular machinery that underlies autophagic responses has been characterized with ever increasing precision in multiple model organisms. Moreover, it has become clear that autophagy and autophagy-related processes have profound implications for human pathophysiology. However, considerable confusion persists about the use of appropriate terms to indicate specific types of autophagy and some components of the autophagy machinery, which may have detrimental effects on the expansion of the field. Driven by the overt recognition of such a potential obstacle, a panel of leading experts in the field attempts here to define several autophagy-related terms based on specific biochemical features. The ultimate objective of this collaborative exchange is to formulate recommendations that facilitate the dissemination of knowledge within and outside the field of autophagy research.
© 2017 The Authors.

Entities:  

Keywords:  LC3‐associated phagocytosis; chaperone‐mediated autophagy; microautophagy; mitophagy; xenophagy

Mesh:

Year:  2017        PMID: 28596378      PMCID: PMC5494474          DOI: 10.15252/embj.201796697

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  376 in total

Review 1.  Nucleus-vacuole junctions and piecemeal microautophagy of the nucleus in S. cerevisiae.

Authors:  Erik Kvam; David S Goldfarb
Journal:  Autophagy       Date:  2007-03-02       Impact factor: 16.016

2.  Import of a cytosolic protein into lysosomes by chaperone-mediated autophagy depends on its folding state.

Authors:  N Salvador; C Aguado; M Horst; E Knecht
Journal:  J Biol Chem       Date:  2000-09-01       Impact factor: 5.157

Review 3.  Interactions between autophagy receptors and ubiquitin-like proteins form the molecular basis for selective autophagy.

Authors:  Vladimir Rogov; Volker Dötsch; Terje Johansen; Vladimir Kirkin
Journal:  Mol Cell       Date:  2014-01-23       Impact factor: 17.970

4.  Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae.

Authors:  M Tsukada; Y Ohsumi
Journal:  FEBS Lett       Date:  1993-10-25       Impact factor: 4.124

Review 5.  Mechanistic insights into selective autophagy pathways: lessons from yeast.

Authors:  Jean-Claude Farré; Suresh Subramani
Journal:  Nat Rev Mol Cell Biol       Date:  2016-07-06       Impact factor: 94.444

6.  The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14.

Authors:  Ji-Man Park; Chang Hwa Jung; Minchul Seo; Neil Michael Otto; Douglas Grunwald; Kwan Hyun Kim; Branden Moriarity; Young-Mi Kim; Colby Starker; Richard Seonghun Nho; Daniel Voytas; Do-Hyung Kim
Journal:  Autophagy       Date:  2016       Impact factor: 16.016

7.  The Burkholderia pseudomallei type III secretion system and BopA are required for evasion of LC3-associated phagocytosis.

Authors:  Lan Gong; Meabh Cullinane; Puthayalai Treerat; Georg Ramm; Mark Prescott; Ben Adler; John D Boyce; Rodney J Devenish
Journal:  PLoS One       Date:  2011-03-11       Impact factor: 3.240

8.  Ambra1 regulates autophagy and development of the nervous system.

Authors:  Gian Maria Fimia; Anastassia Stoykova; Alessandra Romagnoli; Luigi Giunta; Sabrina Di Bartolomeo; Roberta Nardacci; Marco Corazzari; Claudia Fuoco; Ahmet Ucar; Peter Schwartz; Peter Gruss; Mauro Piacentini; Kamal Chowdhury; Francesco Cecconi
Journal:  Nature       Date:  2007-06-24       Impact factor: 49.962

9.  ATM functions at the peroxisome to induce pexophagy in response to ROS.

Authors:  Jiangwei Zhang; Durga Nand Tripathi; Ji Jing; Angela Alexander; Jinhee Kim; Reid T Powell; Ruhee Dere; Jacqueline Tait-Mulder; Ji-Hoon Lee; Tanya T Paull; Raj K Pandita; Vijaya K Charaka; Tej K Pandita; Michael B Kastan; Cheryl Lyn Walker
Journal:  Nat Cell Biol       Date:  2015-09-07       Impact factor: 28.824

10.  A phase I/II trial of hydroxychloroquine in conjunction with radiation therapy and concurrent and adjuvant temozolomide in patients with newly diagnosed glioblastoma multiforme.

Authors:  Myrna R Rosenfeld; Xiaobu Ye; Jeffrey G Supko; Serena Desideri; Stuart A Grossman; Steven Brem; Tom Mikkelson; Daniel Wang; Yunyoung C Chang; Janice Hu; Quentin McAfee; Joy Fisher; Andrea B Troxel; Shengfu Piao; Daniel F Heitjan; Kay-See Tan; Laura Pontiggia; Peter J O'Dwyer; Lisa E Davis; Ravi K Amaravadi
Journal:  Autophagy       Date:  2014-05-20       Impact factor: 16.016

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  515 in total

Review 1.  Role of autophagy in the regulation of adipose tissue biology.

Authors:  Montserrat Romero; Antonio Zorzano
Journal:  Cell Cycle       Date:  2019-06-03       Impact factor: 4.534

2.  Autophagosome biogenesis: From membrane growth to closure.

Authors:  Thomas J Melia; Alf H Lystad; Anne Simonsen
Journal:  J Cell Biol       Date:  2020-06-01       Impact factor: 10.539

3.  Metabolic enzymes expressed by cancer cells impact the immune infiltrate.

Authors:  Gautier Stoll; Margerie Kremer; Normal Bloy; Adrien Joseph; Maria Castedo; Guillaume Meurice; Christophe Klein; Lorenzo Galluzzi; Judith Michels; Guido Kroemer
Journal:  Oncoimmunology       Date:  2019-03-30       Impact factor: 8.110

4.  Genetic Analyses of the Arabidopsis ATG1 Kinase Complex Reveal Both Kinase-Dependent and Independent Autophagic Routes during Fixed-Carbon Starvation.

Authors:  Xiao Huang; Chunyan Zheng; Fen Liu; Chao Yang; Ping Zheng; Xing Lu; Jiang Tian; Taijoon Chung; Marisa S Otegui; Shi Xiao; Caiji Gao; Richard D Vierstra; Faqiang Li
Journal:  Plant Cell       Date:  2019-10-15       Impact factor: 11.277

Review 5.  The coming of age of chaperone-mediated autophagy.

Authors:  Susmita Kaushik; Ana Maria Cuervo
Journal:  Nat Rev Mol Cell Biol       Date:  2018-06       Impact factor: 94.444

6.  Mitochondrial Oxidative Damage Underlies Regulatory T Cell Defects in Autoimmunity.

Authors:  Themis Alissafi; Lydia Kalafati; Maria Lazari; Anastasia Filia; Ismini Kloukina; Maria Manifava; Jong-Hyung Lim; Vasileia Ismini Alexaki; Nicholas T Ktistakis; Triantafyllos Doskas; George A Garinis; Triantafyllos Chavakis; Dimitrios T Boumpas; Panayotis Verginis
Journal:  Cell Metab       Date:  2020-07-31       Impact factor: 27.287

7.  Actin-based motility allows Listeria monocytogenes to avoid autophagy in the macrophage cytosol.

Authors:  Mandy I Cheng; Chen Chen; Patrik Engström; Daniel A Portnoy; Gabriel Mitchell
Journal:  Cell Microbiol       Date:  2018-05-30       Impact factor: 3.715

Review 8.  Lipid Droplets as Organelles.

Authors:  Sarah Cohen
Journal:  Int Rev Cell Mol Biol       Date:  2018-02-12       Impact factor: 6.813

9.  Chaperone-Mediated Autophagy Promotes Beclin1 Degradation in Persistently Infected Hepatitis C Virus Cell Culture.

Authors:  Yucel Aydin; Christopher M Stephens; Srinivas Chava; Zahra Heidari; Rajesh Panigrahi; Donkita D Williams; Kylar Wiltz; Antoinette Bell; Wallace Wilson; Krzysztof Reiss; Srikanta Dash
Journal:  Am J Pathol       Date:  2018-08-01       Impact factor: 4.307

Review 10.  LAP it up, fuzz ball: a short history of LC3-associated phagocytosis.

Authors:  Jennifer Martinez
Journal:  Curr Opin Immunol       Date:  2018-10-02       Impact factor: 7.486

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