| Literature DB >> 28587656 |
Jian-Jun Li1, Ping Chen Jue-Ru Zheng2, Yao-Zong Wang2.
Abstract
BACKGROUND: This study aims at exploring the correlations between DNA methylation and polymorphisms in the promoter region of the human telomerase reverse transcriptase (hTERT) gene and postoperative recurrence in patients with thyroid carcinoma (TC).Entities:
Keywords: DNA methylation; Human telomerase reverse transcriptase gene; Polymorphism; Postoperative recurrence; Thyroid carcinoma
Mesh:
Substances:
Year: 2017 PMID: 28587656 PMCID: PMC5461729 DOI: 10.1186/s12957-017-1170-z
Source DB: PubMed Journal: World J Surg Oncol ISSN: 1477-7819 Impact factor: 2.754
Primer sequences of rs2736100 and rs2736098 polymorphisms for polymerase chain reaction
| SNP | Primer sequence |
|---|---|
| rs2736100 | Forward: 5′-CCCCACAAGCTAAGCATTAT-3′ |
| Reverse: 5′-GAAGAACCACGCAAAGGAC-3′ | |
| rs2736098 | Forward: 5′-CCGTGGTTTCTGTGTGGTGT-3′ |
| Reverse: 5′-CCCCTGAGGAGTAGAGGAAGT-3′ |
SNP single-nucleotide polymorphism
Primer sequences for polymerase chain reaction
| Primer | Primer sequence |
|---|---|
| TERTMF | 5′-ATGATGTGGAGGTTTTGGGAATAG-3′ |
| TERTMR | 5′-Biotin-CCCAACCTAAAAACAACCCTAAT-3′ |
| TERTS | 5′-GGAGGTTTTGGGAATAG-3′ |
Baseline characteristics of patients between the recurrence and non-recurrence groups
| Characteristic | Non-recurrence group | Recurrence group |
|
|
|---|---|---|---|---|
| ( | ( | |||
| Gender | ||||
| Male | 67 (28.3) | 24 (32.0) | 0.69 | 0.467 |
| Female | 170 (71.7) | 51 (68.0) | ||
| Mean age (years) | 42.58 ± 8.40 | 45.04 ± 10.53 | 1.26 | 0.211 |
| Pathological type | ||||
| Papillary thyroid carcinoma | 220 (92.8) | 41 (54.7) | 72.13 | <0.0001 |
| Follicular thyroid carcinoma | 10 (4.2) | 7 (9.3) | ||
| Medullary thyroid carcinoma | 5 (2.1) | 10 (13.3) | ||
| Undifferentiated carcinoma | 2 (0.8) | 17 (22.7) | ||
| Tumor stage | ||||
| I | 174 (73.4) | 10 (13.3) | 98.67 | < 0.0001 |
| II | 25 (10.5) | 20 (26.7) | ||
| III | 35 (14.8) | 29 (38.7) | ||
| IV | 3 (1.3) | 16 (21.3) | ||
Fig. 1Genotypes of hTERT rs2736100 identified by enzyme digestion. Note: hTERT human telomerase reverse transcriptase
Fig. 2Genotypes of hTERT rs2736098 identified by enzyme digestion. Note: hTERT human telomerase reverse transcriptase
Allele frequency and genotype distribution of hTERT rs2736100 and rs2736098 polymorphisms between the recurrence and non-recurrence groups
| Non-recurrence group | Recurrence group |
| OR (95%CI) | |
|---|---|---|---|---|
| ( | ( | |||
| rs2736100 | ||||
| TT genotype | 54 (22.8) | 7 (9.3) | Ref | |
| TG genotype | 133 (56.1) | 39 (52.0) | 0.059 | 0.44 (0.19–1.05) |
| GG genotype | 50 (21.1) | 29 (38.7) | 0.001 | 4.47 (1.80–11.12) |
| T allele | 241 (50.8) | 53 (35.3) | Ref | |
| G allele | 233 (49.2) | 97 (64.7) | 0.001 | 1.89 (1.29–2.77) |
| rs2736098 | ||||
| GG genotype | 135 (57.0) | 46 (61.3) | Ref | |
| GA genotype | 86 (36.3) | 26 (34.7) | 0.671 | 0.89 (0.51–1.54) |
| AA genotype | 16 (6.8) | 3 (4.0) | 0.353 | 0.55 (0.15–1.98) |
| G allele | 356 (75.1) | 118 (78.7) | Ref | |
| A allele | 118 (24.9) | 32 (21.3) | 0.373 | 0.82 (0.53–1.27) |
hTERT human telomerase reverse transcriptase, Ref reference, OR odds ratio, CI confidence interval
Correlations of hTERT rs2736100 polymorphism with baseline characteristics of patients in the recurrence and non-recurrence groups
| Characteristic | Non-recurrence group | Recurrence group | ||||
|---|---|---|---|---|---|---|
| TT + TG (%) | GG (%) |
| TT + TG (%) | GG (%) |
| |
| 187 | 50 | 46 | 29 | |||
| Tumor size | ||||||
| <20 mm | 127 (67.9) | 30 (60.0) | 0.293 | 31 (67.4) | 16 (55.2) | 0.287 |
| ≥20 mm | 60 (32.1) | 20 (40.0) | 15 (32.6) | 13 (44.8) | ||
| Multicentricity | ||||||
| Yes | 115 (61.5) | 28 (56.0) | 0.532 | 27 (58.7) | 9 (31.0) | 0.02 |
| No | 72 (38.5) | 14 (28.0) | 19 (41.3) | 20 (69.0) | ||
| Extrathyroidal invasion | ||||||
| Yes | 66 (35.3) | 22 (44.0) | 0.258 | 11 (23.9) | 22 (75.9) | <0.001 |
| No | 121 (64.7) | 28 (56.0) | 35 (76.1) | 7 (24.1) | ||
| Lymph node metastasis | ||||||
| Yes | 33 (17.6) | 11 (22.0) | 0.482 | 25 (54.3) | 23 (79.3) | 0.028 |
| No | 154 (82.4) | 39 (78.0) | 21 (45.7) | 6 (20.7) | ||
| Pathological type | ||||||
| Papillary thyroid carcinoma | 173 (92.5) | 47 (94.0) | 0.907 | 27 (58.7) | 10 (34.5) | 0.004 |
| Follicular thyroid carcinoma | 8 (4.3) | 2 (4.0) | 5 (10.9) | 2 (6.9) | ||
| Medullary thyroid carcinoma | 4 (2.1) | 1 (2.0) | 8 (17.4) | 2 (6.9) | ||
| Undifferentiated carcinoma | 2 (1.1) | 0 | 6 (13.0) | 15 (51.7) | ||
| Tumor stage | ||||||
| I + II | 156 (83.4) | 43 (86.0) | 0.659 | 21 (45.7) | 9 (31.0) | |
| III + IV | 31 (16.6) | 7 (14.0) | 25 (54.3) | 20 (69.0) | 0.208 | |
hTERT human telomerase reverse transcriptase
Fig. 3a–d DNA methylation levels in the promoter region of the hTERT gene of the four TC samples evaluated by pyrosequencing. Note: hTERT, human telomerase reverse transcriptase; TC, thyroid carcinoma
Fig. 4DNA methylation levels in the hTERT UTSS promoter region of patients of the recurrence and non-recurrence groups. Note: hTERT human telomerase reverse transcriptase, UTSS upstream of the transcription start site; **P < 0.05 compared to the non-recurrence group
Comparison of methylation levels at five CpG sites of patients in the recurrence and non-recurrence groups
| Group | CpG 1 | CpG 2 | CpG 3 | CpG 4 | CpG 5 | Methylation levels | Mean value |
|
|---|---|---|---|---|---|---|---|---|
| Non-recurrence group | 16% | 17% | 18% | 9% | 10% | Low | 14.0% | <0.001 |
| Recurrence group | 25% | 31% | 21% | 39% | 38% | High | 30.8% |
CpG cytidine-phosphate-guanosine
Correlations of methylation levels of the promoter region of hTERT gene with baseline characteristics of patients in the recurrence and non-recurrence groups
| Characteristic | Non-recurrence group | Recurrence group | ||||
|---|---|---|---|---|---|---|
| Hypomethylation (%) | Hypermethylation (%) |
| Hypomethylation (%) ( | Hypomethylation (%) ( |
| |
| Tumor size | ||||||
| <20 mm | 112 (70.0) | 45 (58.4) | 0.078 | 12 (54.5) | 19 (35.8) | |
| ≥20 mm | 48 (30.0) | 32 (41.6) | 10 (45.5) | 34 (64.2) | 0.134 | |
| Multicentricity | ||||||
| Yes | 102 (63.8) | 41 (53.2) | 0.122 | 9 (40.9) | 27 (50.9) | |
| No | 58 (36.3) | 36 (46.8) | 13 (59.1) | 26 (49.1) | 0.428 | |
| Extrathyroidal invasion | ||||||
| Yes | 57 (35.6) | 31 (40.3) | 0.489 | 8 (36.4) | 25 (47.2) | 0.391 |
| No | 103 (64.4) | 46 (59.7) | 14 (63.6) | 28 (52.8) | ||
| Lymph node metastasis | ||||||
| Yes | 29 (18.1) | 15 (19.5) | 0.802 | 7 (31.8) | 41 (77.4) | <0.001 |
| No | 131 (81.9) | 62 (80.5) | 15 (68.2) | 12 (22.6) | ||
| Pathological type | ||||||
| Papillary thyroid carcinoma | 147 (91.9) | 73 (94.8) | 0.707 | 12 (54.5) | 25 (47.2) | |
| Follicular thyroid carcinoma | 7 (4.4) | 3 (3.9) | 2 (9.1) | 5 (9.4) | ||
| Medullary thyroid carcinoma | 4 (2.5) | 1 (1.3) | 2 (9.1) | 8 (15.1) | ||
| Undifferentiated carcinoma | 2 (1.3) | 0 (0.0) | 6 (27.3) | 15 (28.3) | 0.897 | |
| Tumor stage | ||||||
| I + II | 135 (84.4) | 64 (83.1) | 0.805 | 14 (63.6) | 16 (30.2) | |
| III + IV | 25 (15.6) | 13 (16.9) | 8 (36.4) | 37 (69.8) | 0.007 | |
hTERT human telomerase reverse transcriptase