Literature DB >> 28580920

Crystal structure of the Thermoplasma acidophilum protein Ta1207.

Ganesh Ramnath Pathare1, István Nagy1, Ágnes Hubert1, Dennis R Thomas1, Andreas Bracher2.   

Abstract

The crystal structure of the Ta1207 protein from Thermoplasma acidophilum is reported. Ta1207 was identified in a screen for high-molecular-weight protein complexes in T. acidophilum. In solution, Ta1207 forms homopentamers of 188 kDa. The crystal structure of recombinant Ta1207 solved by Se-MAD at 2.4 Å resolution revealed a complex with fivefold symmetry. In the crystal lattice, calcium ions induce the formation of a nanocage from two pentamers. The Ta1207 protomers comprise two domains with the same novel α/β topology. A deep pocket with a binding site for a negatively charged group suggests that Ta1207 functions as an intracellular receptor for an unknown ligand. Homologues of Ta1207 occur only in Thermoplasmatales and its function might be related to the extreme lifestyle of these archaea. The thermostable Ta1207 complex might provide a useful fivefold-symmetric scaffold for future nanotechnological applications.

Entities:  

Keywords:  Ta1207; Thermoplasma acidophilum; archaeon; nanotechnology; pentamers; thermostability

Mesh:

Substances:

Year:  2017        PMID: 28580920      PMCID: PMC5458389          DOI: 10.1107/S2053230X17007087

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  27 in total

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Journal:  Bioinformatics       Date:  1999-04       Impact factor: 6.937

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Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

3.  Looking behind the beamstop: X-ray solution scattering studies of structure and conformational changes of biological macromolecules.

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Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

4.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

5.  Structural proteomics: toward high-throughput structural biology as a tool in functional genomics.

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6.  Coot: model-building tools for molecular graphics.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

7.  Proteomics analysis of Thermoplasma acidophilum with a focus on protein complexes.

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Journal:  Mol Cell Proteomics       Date:  2006-12-06       Impact factor: 5.911

Review 8.  A visual approach to proteomics.

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Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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