| Literature DB >> 28576120 |
Joanna Budna1, Marta Rybska2, Sylwia Ciesiółka1, Artur Bryja3, Sylwia Borys3, Wiesława Kranc3, Katarzyna Wojtanowicz-Markiewicz1,2, Michal Jeseta4, Ewa Sumelka1, Dorota Bukowska2, Paweł Antosik2, Klaus P Brüssow3, Małgorzata Bruska3, Michał Nowicki1, Maciej Zabel1, Bartosz Kempisty5,6.
Abstract
BACKGROUND: The full maturational capability of mammalian oocytes is accompanied by nuclear and cytoplasmic modifications, which are associated with proliferation and differentiation of surrounding cumulus cells. These events are regulated on molecular level by the expression of target genes involved in signal transduction pathways crucial for folliculogenesis and oogenesis. Transforming growth factor beta signaling includes several molecules that are involved in the regulation of oogenesis and embryo growth, including bone morphogenetic protein (BMP). However, the BMP-related gene expression profile in oocytes at different maturational stages requires further investigation.Entities:
Keywords: In vitro maturation; Microarray; Oocytes; Pig
Mesh:
Substances:
Year: 2017 PMID: 28576120 PMCID: PMC5457624 DOI: 10.1186/s12958-017-0261-6
Source DB: PubMed Journal: Reprod Biol Endocrinol ISSN: 1477-7827 Impact factor: 5.211
Oligonucleotide sequences of primers used for RT-qPCR analysis
| Transcript | Sequence (5′-3′ direction) | Gene accession no. | Product size (bp) | Efficiency |
|---|---|---|---|---|
| CHRDL1 | AACAATGCCTGTGTATGAGT | XM_005673817.2 | 242 | 91% |
| FST | GAGCCCACCTCCTCAGGAC | NM_001003662.1 | 238 | 94% |
| TGFβR3 | TGATCCACCATGAAGTGCAGT | NM_214272.1 | 190 | 108% |
| ID1 | AGCTGAACTCGGAATCCCAA | NM_001244700.1 | 147 | 107% |
| SMAD4 | CCAAGTGCATATATAAAGGTCT | XM_013985326 | 235 | 98% |
| PBGD | GAGAGTGCCCCTATGATGCT | NM_001097412.1 | 214 bp | 97% |
| B-ACTIN | GGGAGATCGTGCGGGACAT | DQ845171 | 141 bp | 99% |
| 18S rRNA | GTGAAACTGCGAATGGCTC | AB117609 | 105 bp | 97% |
Fig. 1Heat map representing differentially expressed genes belonging to the “BMP signaling pathway” - functional category from DAVID GEOTERM BP database. Arbitrary signal intensity acquired from microarray analysis is represented by colors (green – higher, red - lower expression). Log2 signal intensity values for any single gene were resized to Row Z-Score scale (from −2 - the lowest expression to +2 - the highest expression for single gene)
Fold changes and adjusted p-values of differentially expressed genes
| Gene symbol | Gene name | Fold change | Adj. |
|---|---|---|---|
| CHRDL1 | chordin-like 1 | −7,18 | 0,00005 |
| TGFβR3 | transforming growth factor, beta receptor III | −5,09 | 0,00041 |
| FST | follistatin | −4,45 | 000036 |
| ID1 | Inhibitor of DN binding 1, dominant negative helix-loop-helix protein | −2,98 | 0,00397 |
| SMAD4 | SMAD family member 4 | −2,72 | 0,00124 |
Fold changes and adjusted p-values of differentially expressed genes belonging to the “BMP signaling pathway” functional category from DAVID GEOTERM BP database. Symbols and names of the selected genes are also shown
Top five GO categories formed by differentially expressed genes
| Biological Process (GO) | ||
|---|---|---|
| Pathway ID | Pathway Description | Count in gene set |
| GO: 0030509 | BMP signaling pathway | 4 |
| GO: 0071772 | Response to BMP | 4 |
| GO: 0071773 | Cellular response to BMP stimulus | 4 |
| GO: 0007178 | Transmembrane receptor protein serine/threonine kinase signaling pathway | 4 |
| GO: 0090092 | Regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 4 |
Top five GO categories formed by differentially expressed genes belonging to the “BMP signaling pathway” ontology group. GO categories were generated in STRING software. GO ID (pathway ID), GO term description (pathway description), number of the genes belonging to appropriate category (count in gene set) are shown
Fig. 2Validation of microarray data by RT-qPCR. Comparison of gene expression analysis of oocytes before IVM and after IVM using microarray assay and RT-qPCR. RT-qPCR analysis was normalized to the expression of three housekeeping genes (PBGD, β-actin, 18S rRNA). Error bars represent the standard error of the mean (SEM) for groups of oocytes. Statistically significant differences are presented as: *p < 0.05, **p < 0.01, and ***p < 0.001