Literature DB >> 28573398

High-fidelity PCR enzyme with DNA-binding domain facilitates de novo gene synthesis.

A S Dolgova1, O A Stukolova2,3.   

Abstract

Nowadays enzymatic synthesis of genes is the most powerful tool for fast resolution of the various tasks in the field of basic and applied biological research. PCR-based gene assembly from overlapping oligonucleotides has become a widely used strategy. However, all the methods described in the literature are not perfect and need an extra processing step. In this study we are verifying Phusion high-fidelity polymerase as a tool to reduce nucleotide mismatches in de novo gene synthesis, thus facilitating subsequent cloning. To test the efficiency of the polymerase, we selected Fel d 4 gene, which is a 581 bp DNA sequence encoding the lipocalin allergen protein, one of the major cat allergens. The approach described here, therefore, would be useful in DNA sequences creation.

Keywords:  De novo gene synthesis; Fel d 4; High-fidelity polymerase; One-step PCR

Year:  2017        PMID: 28573398      PMCID: PMC5453909          DOI: 10.1007/s13205-017-0745-2

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  18 in total

1.  A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences.

Authors:  Ai-Sheng Xiong; Quan-Hong Yao; Ri-He Peng; Xian Li; Hui-Qin Fan; Zong-Ming Cheng; Yi Li
Journal:  Nucleic Acids Res       Date:  2004-07-07       Impact factor: 16.971

2.  De novo DNA synthesis using single-molecule PCR.

Authors:  Tuval Ben Yehezkel; Gregory Linshiz; Ehud Shapiro
Journal:  Methods Mol Biol       Date:  2012

3.  BEAMing up for detection and quantification of rare sequence variants.

Authors:  Meng Li; Frank Diehl; Devin Dressman; Bert Vogelstein; Kenneth W Kinzler
Journal:  Nat Methods       Date:  2006-02       Impact factor: 28.547

4.  PCR-based accurate synthesis of long DNA sequences.

Authors:  Ai-Sheng Xiong; Quan-Hong Yao; Ri-He Peng; Hui Duan; Xian Li; Hui-Qin Fan; Zong-Ming Cheng; Yi Li
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  Introduction to the synthesis and purification of oligonucleotides.

Authors:  A Ellington; J D Pollard
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-05

Review 6.  Error correction in gene synthesis technology.

Authors:  Siying Ma; Ishtiaq Saaem; Jingdong Tian
Journal:  Trends Biotechnol       Date:  2011-12-28       Impact factor: 19.536

Review 7.  Computational tools and algorithms for designing customized synthetic genes.

Authors:  Nathan Gould; Oliver Hendy; Dimitris Papamichail
Journal:  Front Bioeng Biotechnol       Date:  2014-10-06

8.  A simple and accurate two-step long DNA sequences synthesis strategy to improve heterologous gene expression in pichia.

Authors:  Jiang-Ke Yang; Fang-Yuan Chen; Xiang-Xiang Yan; Li-Hong Miao; Jiang-Hong Dai
Journal:  PLoS One       Date:  2012-05-04       Impact factor: 3.240

9.  Error Rate Comparison during Polymerase Chain Reaction by DNA Polymerase.

Authors:  Peter McInerney; Paul Adams; Masood Z Hadi
Journal:  Mol Biol Int       Date:  2014-08-17

10.  Codon optimization and factorial screening for enhanced soluble expression of human ciliary neurotrophic factor in Escherichia coli.

Authors:  Jaakko M Itkonen; Arto Urtti; Louise E Bird; Sanjay Sarkhel
Journal:  BMC Biotechnol       Date:  2014-11-14       Impact factor: 2.563

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  1 in total

1.  Recombinant Expression and Purification of Extracellular Domain of the Programmed Cell Death Protein Receptor.

Authors:  Adish Zhansaya; Mukantayev Kanatbek; Tursunov Kanat; Ingirbay Bakhytkali; Kanayev Darkhan; Kulyyassov Arman; Tarlykov Pavel; Mukanov Kasym; Ramankulov Yerlan
Journal:  Rep Biochem Mol Biol       Date:  2020-01
  1 in total

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