Literature DB >> 22209624

Error correction in gene synthesis technology.

Siying Ma1, Ishtiaq Saaem, Jingdong Tian.   

Abstract

Accurate, economical and high-throughput gene and genome synthesis is essential to the development of synthetic biology and biotechnology. New large-scale gene synthesis methods harnessing the power of DNA microchips have recently been demonstrated. Yet, the technology is still compromised by a high occurrence of errors in the synthesized products. These errors still require substantial effort to correct. To solve this bottleneck, novel approaches based on new chemistry, enzymology or next generation sequencing have emerged. This review discusses these new trends and promising strategies of error filtration, correction and prevention in de novo gene and genome synthesis. Continued innovation in error correction technologies will enable affordable and large-scale gene and genome synthesis in the near future.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22209624      PMCID: PMC3933390          DOI: 10.1016/j.tibtech.2011.10.002

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  72 in total

1.  Mismatch cleavage by single-strand specific nucleases.

Authors:  Bradley J Till; Chris Burtner; Luca Comai; Steven Henikoff
Journal:  Nucleic Acids Res       Date:  2004-05-11       Impact factor: 16.971

Review 2.  Enzymes and molecular mechanisms of genetic recombination.

Authors:  S C West
Journal:  Annu Rev Biochem       Date:  1992       Impact factor: 23.643

Review 3.  Advancing high-throughput gene synthesis technology.

Authors:  Jingdong Tian; Kuosheng Ma; Ishtiaq Saaem
Journal:  Mol Biosyst       Date:  2009-04-06

4.  Introduction to the synthesis and purification of oligonucleotides.

Authors:  A Ellington; J D Pollard
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-05

5.  PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases.

Authors:  J Cline; J C Braman; H H Hogrefe
Journal:  Nucleic Acids Res       Date:  1996-09-15       Impact factor: 16.971

6.  Studies on T4-head maturation. 1. Purification and characterization of gene-49-controlled endonuclease.

Authors:  B Kemper; M Garabett
Journal:  Eur J Biochem       Date:  1981-03-16

7.  Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences.

Authors:  Xiaochuan Zhou; Shiying Cai; Ailing Hong; Qimin You; Peilin Yu; Nijing Sheng; Onnop Srivannavit; Seema Muranjan; Jean Marie Rouillard; Yongmei Xia; Xiaolin Zhang; Qin Xiang; Renuka Ganesh; Qi Zhu; Anna Matejko; Erdogan Gulari; Xiaolian Gao
Journal:  Nucleic Acids Res       Date:  2004-10-11       Impact factor: 16.971

8.  Correcting errors in synthetic DNA through consensus shuffling.

Authors:  Brock F Binkowski; Kathryn E Richmond; James Kaysen; Michael R Sussman; Peter J Belshaw
Journal:  Nucleic Acids Res       Date:  2005-03-30       Impact factor: 16.971

Review 9.  Synthetic viruses: a new opportunity to understand and prevent viral disease.

Authors:  Eckard Wimmer; Steffen Mueller; Terrence M Tumpey; Jeffery K Taubenberger
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

10.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

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  26 in total

1.  High-fidelity PCR enzyme with DNA-binding domain facilitates de novo gene synthesis.

Authors:  A S Dolgova; O A Stukolova
Journal:  3 Biotech       Date:  2017-06-01       Impact factor: 2.406

2.  Synthesis and cell-free cloning of DNA libraries using programmable microfluidics.

Authors:  Tuval Ben Yehezkel; Arnaud Rival; Ofir Raz; Rafael Cohen; Zipora Marx; Miguel Camara; Jean-Frédéric Dubern; Birgit Koch; Stephan Heeb; Natalio Krasnogor; Cyril Delattre; Ehud Shapiro
Journal:  Nucleic Acids Res       Date:  2015-10-19       Impact factor: 16.971

3.  A systematic comparison of error correction enzymes by next-generation sequencing.

Authors:  Nathan B Lubock; Di Zhang; Angus M Sidore; George M Church; Sriram Kosuri
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

4.  Next generation 1536-well oligonucleotide synthesizer with on-the-fly dispense.

Authors:  Michael Jensen; Lester Roberts; Andrew Johnson; Marilyn Fukushima; Ronald Davis
Journal:  J Biotechnol       Date:  2013-12-16       Impact factor: 3.307

5.  High-throughput construction of multiple cas9 gene variants via assembly of high-depth tiled and sequence-verified oligonucleotides.

Authors:  Namjin Cho; Han Na Seo; Taehoon Ryu; Euijin Kwon; Sunghoon Huh; Jinsung Noh; Huiran Yeom; Byungjin Hwang; Heejeong Ha; Ji Hyun Lee; Sunghoon Kwon; Duhee Bang
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

Review 6.  DNA synthesis, assembly and applications in synthetic biology.

Authors:  Siying Ma; Nicholas Tang; Jingdong Tian
Journal:  Curr Opin Chem Biol       Date:  2012-05-25       Impact factor: 8.822

7.  High-throughput screening of microchip-synthesized genes in programmable double-emulsion droplets.

Authors:  H F Chan; S Ma; J Tian; K W Leong
Journal:  Nanoscale       Date:  2017-03-09       Impact factor: 7.790

8.  A T-cell response to a liver-stage Plasmodium antigen is not boosted by repeated sporozoite immunizations.

Authors:  Sean C Murphy; Arnold Kas; Brad C Stone; Michael J Bevan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

9.  T7 Endonuclease I Mediates Error Correction in Artificial Gene Synthesis.

Authors:  Ana Filipa Sequeira; Catarina I P D Guerreiro; Renaud Vincentelli; Carlos M G A Fontes
Journal:  Mol Biotechnol       Date:  2016-09       Impact factor: 2.695

10.  Parallel DNA Synthesis on Poly(ethylene terephthalate).

Authors:  Matthew T Holden; Matthew C D Carter; Shannon K Ting; David M Lynn; Lloyd M Smith
Journal:  Chembiochem       Date:  2017-08-30       Impact factor: 3.164

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