Literature DB >> 28573304

Universal signal generator for dynamic cell stimulation.

Andreas Piehler1, Navid Ghorashian, Ce Zhang, Savaş Tay.   

Abstract

Dynamic cell stimulation is a powerful technique for probing gene networks and for applications in stem cell differentiation, immunomodulation and signaling. We developed a robust and flexible method and associated microfluidic devices to generate a wide-range of precisely formulated dynamic chemical signals to stimulate live cells and measure their dynamic response. This signal generator is capable of digital to analog conversion (DAC) through combinatoric selection of discrete input concentrations, and outperforms existing methods by both achievable resolution, dynamic range and simplicity in design. It requires no calibration, has minimal space requirements and can be easily integrated into microfluidic cell culture devices. The signal generator hardware and software we developed allows to choose the waveform, period and amplitude of chemical input signals and features addition of well-defined chemical noise to study the role of stochasticity in cellular information processing.

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Year:  2017        PMID: 28573304      PMCID: PMC5767101          DOI: 10.1039/c7lc00531h

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  43 in total

1.  Chaotic mixer for microchannels.

Authors:  Abraham D Stroock; Stephan K W Dertinger; Armand Ajdari; Igor Mezic; Howard A Stone; George M Whitesides
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

2.  Optimizing information flow in small genetic networks. II. Feed-forward interactions.

Authors:  Aleksandra M Walczak; Gasper Tkacik; William Bialek
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-04-06

3.  Generation of dynamic chemical signals with microfluidic C-DACs.

Authors:  L Chen; F Azizi; C H Mastrangelo
Journal:  Lab Chip       Date:  2007-05-31       Impact factor: 6.799

4.  Signal processing by the HOG MAP kinase pathway.

Authors:  Pascal Hersen; Megan N McClean; L Mahadevan; Sharad Ramanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-14       Impact factor: 11.205

Review 5.  Microfluidic cell culture.

Authors:  Matthias Mehling; Savaş Tay
Journal:  Curr Opin Biotechnol       Date:  2013-11-12       Impact factor: 9.740

6.  Noise decomposition of intracellular biochemical signaling networks using nonequivalent reporters.

Authors:  Alex Rhee; Raymond Cheong; Andre Levchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

7.  A systems-level analysis of perfect adaptation in yeast osmoregulation.

Authors:  Dale Muzzey; Carlos A Gómez-Uribe; Jerome T Mettetal; Alexander van Oudenaarden
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

Review 8.  Impulse control: temporal dynamics in gene transcription.

Authors:  Nir Yosef; Aviv Regev
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

9.  Tuning-free controller to accurately regulate flow rates in a microfluidic network.

Authors:  Young Jin Heo; Junsu Kang; Min Jun Kim; Wan Kyun Chung
Journal:  Sci Rep       Date:  2016-03-18       Impact factor: 4.379

10.  Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis.

Authors:  Jakub Pękalski; Pawel J Zuk; Marek Kochańczyk; Michael Junkin; Ryan Kellogg; Savaş Tay; Tomasz Lipniacki
Journal:  PLoS One       Date:  2013-11-11       Impact factor: 3.240

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  3 in total

1.  A programmable platform for sub-second multichemical dynamic stimulation and neuronal functional imaging in C. elegans.

Authors:  T Rouse; G Aubry; Y Cho; M Zimmer; H Lu
Journal:  Lab Chip       Date:  2018-01-30       Impact factor: 6.799

2.  On chaotic dynamics in transcription factors and the associated effects in differential gene regulation.

Authors:  Mathias L Heltberg; Sandeep Krishna; Mogens H Jensen
Journal:  Nat Commun       Date:  2019-01-08       Impact factor: 14.919

3.  A System for Analog Control of Cell Culture Dynamics to Reveal Capabilities of Signaling Networks.

Authors:  Chaitanya S Mokashi; David L Schipper; Mohammad A Qasaimeh; Robin E C Lee
Journal:  iScience       Date:  2019-08-08
  3 in total

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