Literature DB >> 28564277

SEARCHING FOR EVOLUTIONARY PATTERNS IN THE SHAPE OF A PHYLOGENETIC TREE.

Mark Kirxpatrick1, Montgomery Slatkin2.   

Abstract

If all species in a clade are equally likely to speciate or become extinct, then highly symmetric and highly asymmetric phylogenetic trees are unlikely to result. Variation between species in speciation and extinction rates can cause excessive asymmetry. We developed six non-parametric statistical tests that test for nonrandom patterns of branching in any bifurcating tree. The tests are demonstrated by applying them to two published phylogenies for genera of beetles. Comparison of the power of the six statistics under a simple model of biased speciation suggests which of them may be most useful for detecting nonrandom tree shapes. © 1993 The Society for the Study of Evolution.

Keywords:  Cladogenesis; extinction; phylogenetic tree; phylogeny; speciation; tree balance; tree symmetry

Year:  1993        PMID: 28564277     DOI: 10.1111/j.1558-5646.1993.tb02144.x

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  31 in total

1.  Calculations for multi-type age-dependent binary branching processes.

Authors:  Graham Jones
Journal:  J Math Biol       Date:  2010-08-27       Impact factor: 2.259

2.  A novel view on stem cell development: analysing the shape of cellular genealogies.

Authors:  I Glauche; R Lorenz; D Hasenclever; I Roeder
Journal:  Cell Prolif       Date:  2009-02-27       Impact factor: 6.831

3.  Comparing Phylogenetic Trees by Matching Nodes Using the Transfer Distance Between Partitions.

Authors:  Damian Bogdanowicz; Krzysztof Giaro
Journal:  J Comput Biol       Date:  2017-02-08       Impact factor: 1.479

4.  Exact formulas for the variance of several balance indices under the Yule model.

Authors:  Gabriel Cardona; Arnau Mir; Francesc Rosselló
Journal:  J Math Biol       Date:  2012-11-02       Impact factor: 2.259

5.  A Two-State Model of Tree Evolution and Its Applications to Alu Retrotransposition.

Authors:  Niema Moshiri; Siavash Mirarab
Journal:  Syst Biol       Date:  2018-05-01       Impact factor: 15.683

6.  Detecting Recent Positive Selection with a Single Locus Test Bipartitioning the Coalescent Tree.

Authors:  Zongfeng Yang; Junrui Li; Thomas Wiehe; Haipeng Li
Journal:  Genetics       Date:  2017-12-07       Impact factor: 4.562

7.  A Metric on Phylogenetic Tree Shapes.

Authors:  C Colijn; G Plazzotta
Journal:  Syst Biol       Date:  2018-01-01       Impact factor: 15.683

Review 8.  Genomic Analysis of Viral Outbreaks.

Authors:  Shirlee Wohl; Stephen F Schaffner; Pardis C Sabeti
Journal:  Annu Rev Virol       Date:  2016-08-03       Impact factor: 10.431

9.  Inferring Tumor Proliferative Organization from Phylogenetic Tree Measures in a Computational Model.

Authors:  Jacob G Scott; Philip K Maini; Alexander R A Anderson; Alexander G Fletcher
Journal:  Syst Biol       Date:  2020-07-01       Impact factor: 15.683

10.  Estimate of within population incremental selection through branch imbalance in lineage trees.

Authors:  Gilad Liberman; Jennifer I C Benichou; Yaakov Maman; Jacob Glanville; Idan Alter; Yoram Louzoun
Journal:  Nucleic Acids Res       Date:  2015-11-19       Impact factor: 16.971

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