Literature DB >> 28555659

Human Y-chromosome variation in the genome-sequencing era.

Mark A Jobling1, Chris Tyler-Smith2.   

Abstract

The properties of the human Y chromosome - namely, male specificity, haploidy and escape from crossing over - make it an unusual component of the genome, and have led to its genetic variation becoming a key part of studies of human evolution, population history, genealogy, forensics and male medical genetics. Next-generation sequencing (NGS) technologies have driven recent progress in these areas. In particular, NGS has yielded direct estimates of mutation rates, and an unbiased and calibrated molecular phylogeny that has unprecedented detail. Moreover, the availability of direct-to-consumer NGS services is fuelling a rise of 'citizen scientists', whose interest in resequencing their own Y chromosomes is generating a wealth of new data.

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Year:  2017        PMID: 28555659     DOI: 10.1038/nrg.2017.36

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  133 in total

1.  The ancestry of Brazilian mtDNA lineages.

Authors:  J Alves-Silva; M da Silva Santos; P E Guimarães; A C Ferreira; H J Bandelt; S D Pena; V F Prado
Journal:  Am J Hum Genet       Date:  2000-06-28       Impact factor: 11.025

2.  A nomenclature system for the tree of human Y-chromosomal binary haplogroups.

Authors: 
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

3.  The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time.

Authors:  Lev A Zhivotovsky; Peter A Underhill; Cengiz Cinnioğlu; Manfred Kayser; Bharti Morar; Toomas Kivisild; Rosaria Scozzari; Fulvio Cruciani; Giovanni Destro-Bisol; Gabriella Spedini; Geoffrey K Chambers; Rene J Herrera; Kiau Kiun Yong; David Gresham; Ivailo Tournev; Marcus W Feldman; Luba Kalaydjieva
Journal:  Am J Hum Genet       Date:  2003-12-19       Impact factor: 11.025

4.  The DNA of a nation.

Authors:  Vivien Marx
Journal:  Nature       Date:  2015-08-27       Impact factor: 49.962

Review 5.  Mosaicism in health and disease - clones picking up speed.

Authors:  Lars A Forsberg; David Gisselsson; Jan P Dumanski
Journal:  Nat Rev Genet       Date:  2016-12-12       Impact factor: 53.242

6.  Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees.

Authors:  E Heyer; J Puymirat; P Dieltjes; E Bakker; P de Knijff
Journal:  Hum Mol Genet       Date:  1997-05       Impact factor: 6.150

7.  Copy number variation in the human Y chromosome in the UK population.

Authors:  Wei Wei; Tomas W Fitzgerald; Tomas Fitzgerald; Qasim Ayub; Andrea Massaia; Blair H Smith; Blair B Smith; Anna F Dominiczak; Anna A Dominiczak; Andrew D Morris; Andrew A Morris; David J Porteous; David D Porteous; Matthew E Hurles; Chris Tyler-Smith; Yali Xue
Journal:  Hum Genet       Date:  2015-05-10       Impact factor: 4.132

8.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

Review 9.  Forensic use of Y-chromosome DNA: a general overview.

Authors:  Manfred Kayser
Journal:  Hum Genet       Date:  2017-03-17       Impact factor: 4.132

10.  A comparison of Y-chromosomal lineage dating using either resequencing or Y-SNP plus Y-STR genotyping.

Authors:  Wei Wei; Qasim Ayub; Yali Xue; Chris Tyler-Smith
Journal:  Forensic Sci Int Genet       Date:  2013-06-13       Impact factor: 4.882

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  57 in total

1.  The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola.

Authors:  Sandra Oliveira; Alexander Hübner; Anne-Maria Fehn; Teresa Aço; Fernanda Lages; Brigitte Pakendorf; Mark Stoneking; Jorge Rocha
Journal:  Eur J Hum Genet       Date:  2018-11-22       Impact factor: 4.246

2.  Copy number variation arising from gene conversion on the human Y chromosome.

Authors:  Wentao Shi; Andrea Massaia; Sandra Louzada; Ruby Banerjee; Pille Hallast; Yuan Chen; Anders Bergström; Yong Gu; Steven Leonard; Michael A Quail; Qasim Ayub; Fengtang Yang; Chris Tyler-Smith; Yali Xue
Journal:  Hum Genet       Date:  2017-12-05       Impact factor: 4.132

3.  Y-Chromosome Genetic Variation Associated With Atherosclerosis and Inflammation.

Authors:  Aldons J Lusis
Journal:  Arterioscler Thromb Vasc Biol       Date:  2019-10-23       Impact factor: 8.311

4.  The Personal Genome Project Canada: findings from whole genome sequences of the inaugural 56 participants.

Authors:  Miriam S Reuter; Susan Walker; Bhooma Thiruvahindrapuram; Joe Whitney; Iris Cohn; Neal Sondheimer; Ryan K C Yuen; Brett Trost; Tara A Paton; Sergio L Pereira; Jo-Anne Herbrick; Richard F Wintle; Daniele Merico; Jennifer Howe; Jeffrey R MacDonald; Chao Lu; Thomas Nalpathamkalam; Wilson W L Sung; Zhuozhi Wang; Rohan V Patel; Giovanna Pellecchia; John Wei; Lisa J Strug; Sherilyn Bell; Barbara Kellam; Melanie M Mahtani; Anne S Bassett; Yvonne Bombard; Rosanna Weksberg; Cheryl Shuman; Ronald D Cohn; Dimitri J Stavropoulos; Sarah Bowdin; Matthew R Hildebrandt; Wei Wei; Asli Romm; Peter Pasceri; James Ellis; Peter Ray; M Stephen Meyn; Nasim Monfared; S Mohsen Hosseini; Ann M Joseph-George; Fred W Keeley; Ryan A Cook; Marc Fiume; Hin C Lee; Christian R Marshall; Jill Davies; Allison Hazell; Janet A Buchanan; Michael J Szego; Stephen W Scherer
Journal:  CMAJ       Date:  2018-02-05       Impact factor: 8.262

Review 5.  Mosaic loss of human Y chromosome: what, how and why.

Authors:  Xihan Guo; Xueqin Dai; Tao Zhou; Han Wang; Juan Ni; Jinglun Xue; Xu Wang
Journal:  Hum Genet       Date:  2020-02-04       Impact factor: 4.132

6.  Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data.

Authors:  Hao Chen; Yan Lu; Dongsheng Lu; Shuhua Xu
Journal:  BMC Bioinformatics       Date:  2021-03-09       Impact factor: 3.169

7.  Hematopoietic loss of Y chromosome leads to cardiac fibrosis and heart failure mortality.

Authors:  Soichi Sano; Keita Horitani; Hayato Ogawa; Jonatan Halvardson; Nicholas W Chavkin; Ying Wang; Miho Sano; Jonas Mattisson; Atsushi Hata; Marcus Danielsson; Emiri Miura-Yura; Ammar Zaghlool; Megan A Evans; Tove Fall; Henry N De Hoyos; Johan Sundström; Yoshimitsu Yura; Anupreet Kour; Yohei Arai; Mark C Thel; Yuka Arai; Josyf C Mychaleckyj; Karen K Hirschi; Lars A Forsberg; Kenneth Walsh
Journal:  Science       Date:  2022-07-14       Impact factor: 63.714

8.  Copy number variation of ZNF280BY across eight sheep breeds and its association with testicular size of Hu sheep.

Authors:  Shengwei Pei; Haiyue Xu; Li Wang; Fadi Li; Wanhong Li; Xiangpeng Yue
Journal:  J Anim Sci       Date:  2022-09-01       Impact factor: 3.338

9.  Developmental validation study of a 24-plex Y-STR direct amplification system for forensic application.

Authors:  Yanfang Liu; Yuxin Guo; Xiaoye Jin; Shuyan Mei; Tong Xie; Qiong Lan; Yating Fang; Bofeng Zhu
Journal:  Int J Legal Med       Date:  2019-12-18       Impact factor: 2.686

10.  Insights Into Forensic Features and Genetic Structures of Guangdong Maoming Han Based on 27 Y-STRs.

Authors:  Haoliang Fan; Qiqian Xie; Yanning Li; Lingxiang Wang; Shao-Qing Wen; Pingming Qiu
Journal:  Front Genet       Date:  2021-06-18       Impact factor: 4.599

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