Literature DB >> 33456978

The DPF Domain As a Unique Structural Unit Participating in Transcriptional Activation, Cell Differentiation, and Malignant Transformation.

N V Soshnikova1, A A Sheynov1, Eu V Tatarskiy1, S G Georgieva1,2.   

Abstract

The DPF (double PHD finger) domain consists of two PHD fingers organized in tandem. The two PHD-finger domains within a DPF form a single structure that interacts with the modification of the N-terminal histone fragment in a way different from that for single PHD fingers. Several histone modifications interacting with the DPF domain have already been identified. They include acetylation of H3K14 and H3K9, as well as crotonylation of H3K14. These modifications are found predominantly in transcriptionally active chromatin. Proteins containing DPF belong to two classes of protein complexes, which are the transcriptional coactivators involved in the regulation of the chromatin structure. These are the histone acetyltransferase complex belonging to the MYST family and the SWI/SNF chromatin-remodeling complex. The DPF domain is responsible for the specificity of the interactions between these complexes and chromatin. Proteins containing DPF play a crucial role in the activation of the transcription of a number of genes expressed during the development of an organism. These genes are important in the differentiation and malignant transformation of mammalian cells. Copyright ® 2020 National Research University Higher School of Economics.

Entities:  

Keywords:  BAF; DPF domains; DPF1; DPF2; DPF3; MOZ and MORF histone acetyltransferases; PBAF; PHF10; tandem PHD

Year:  2020        PMID: 33456978      PMCID: PMC7800603          DOI: 10.32607/actanaturae.11092

Source DB:  PubMed          Journal:  Acta Naturae        ISSN: 2075-8251            Impact factor:   1.845


  64 in total

1.  A novel fusion variant of the MORF and CBP genes detected in therapy-related myelodysplastic syndrome with t(10;16)(q22;p13).

Authors:  Kensuke Kojima; Kinuyo Kaneda; Chikamasa Yoshida; Hirokata Dansako; Nobuharu Fujii; Tomofumi Yano; Katsuji Shinagawa; Masaki Yasukawa; Shigeru Fujita; Mitsune Tanimoto
Journal:  Br J Haematol       Date:  2003-01       Impact factor: 6.998

2.  Engineering a protein scaffold from a PHD finger.

Authors:  Ann H Y Kwan; David A Gell; Alexis Verger; Merlin Crossley; Jacqueline M Matthews; Joel P Mackay
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

3.  The leucine twenty homeobox (LEUTX) gene, which lacks a histone acetyltransferase domain, is fused to KAT6A in therapy-related acute myeloid leukemia with t(8;19)(p11;q13).

Authors:  Yoshiaki Chinen; Tomohiko Taki; Yasuhiko Tsutsumi; Satoru Kobayashi; Yosuke Matsumoto; Natsumi Sakamoto; Junya Kuroda; Shigeo Horiike; Kazuhiro Nishida; Hirofumi Ohno; Naokuni Uike; Masafumi Taniwaki
Journal:  Genes Chromosomes Cancer       Date:  2014-01-21       Impact factor: 5.006

4.  Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation.

Authors:  Benjamin R Sabari; Zhanyun Tang; He Huang; Vladimir Yong-Gonzalez; Henrik Molina; Ha Eun Kong; Lunzhi Dai; Miho Shimada; Justin R Cross; Yingming Zhao; Robert G Roeder; C David Allis
Journal:  Mol Cell       Date:  2018-02-01       Impact factor: 17.970

5.  MOZ and BMI1 play opposing roles during Hox gene activation in ES cells and in body segment identity specification in vivo.

Authors:  Bilal N Sheikh; Natalie L Downer; Belinda Phipson; Hannah K Vanyai; Andrew J Kueh; Davis J McCarthy; Gordon K Smyth; Tim Thomas; Anne K Voss
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-14       Impact factor: 11.205

6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

7.  Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex.

Authors:  Martin Lange; Bogac Kaynak; Ulrike B Forster; Martje Tönjes; Jenny J Fischer; Christina Grimm; Jenny Schlesinger; Steffen Just; Ilona Dunkel; Tammo Krueger; Siegrun Mebus; Hans Lehrach; Rudi Lurz; Johan Gobom; Wolfgang Rottbauer; Salim Abdelilah-Seyfried; Silke Sperling
Journal:  Genes Dev       Date:  2008-09-01       Impact factor: 11.361

8.  An essential switch in subunit composition of a chromatin remodeling complex during neural development.

Authors:  Julie Lessard; Jiang I Wu; Jeffrey A Ranish; Mimi Wan; Monte M Winslow; Brett T Staahl; Hai Wu; Ruedi Aebersold; Isabella A Graef; Gerald R Crabtree
Journal:  Neuron       Date:  2007-07-19       Impact factor: 17.173

9.  TRIM24 links a non-canonical histone signature to breast cancer.

Authors:  Wen-Wei Tsai; Zhanxin Wang; Teresa T Yiu; Kadir C Akdemir; Weiya Xia; Stefan Winter; Cheng-Yu Tsai; Xiaobing Shi; Dirk Schwarzer; William Plunkett; Bruce Aronow; Or Gozani; Wolfgang Fischle; Mien-Chie Hung; Dinshaw J Patel; Michelle Craig Barton
Journal:  Nature       Date:  2010-12-16       Impact factor: 49.962

10.  Identification of MYST3 as a novel epigenetic activator of ERα frequently amplified in breast cancer.

Authors:  L Yu; Y Liang; X Cao; X Wang; H Gao; S-Y Lin; R Schiff; X-S Wang; K Li
Journal:  Oncogene       Date:  2016-11-28       Impact factor: 9.867

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  3 in total

Review 1.  Conserved Structure and Evolution of DPF Domain of PHF10-The Specific Subunit of PBAF Chromatin Remodeling Complex.

Authors:  Anton O Chugunov; Nadezhda A Potapova; Natalia S Klimenko; Victor V Tatarskiy; Sofia G Georgieva; Nataliya V Soshnikova
Journal:  Int J Mol Sci       Date:  2021-10-15       Impact factor: 5.923

2.  PHF10 subunit of PBAF complex mediates transcriptional activation by MYC.

Authors:  N V Soshnikova; E V Tatarskiy; V V Tatarskiy; N S Klimenko; A A Shtil; M A Nikiforov; S G Georgieva
Journal:  Oncogene       Date:  2021-08-31       Impact factor: 9.867

3.  Baf45a Mediated Chromatin Remodeling Promotes Transcriptional Activation for Osteogenesis and Odontogenesis.

Authors:  Theodore Busby; Yuechuan Chen; Tanner C Godfrey; Mohammad Rehan; Benjamin J Wildman; Caris M Smith; Quamarul Hassan
Journal:  Front Endocrinol (Lausanne)       Date:  2022-01-03       Impact factor: 5.555

  3 in total

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