Literature DB >> 28529980

The evolutionary origin of plant and animal microRNAs.

Yehu Moran1, Maayan Agron1, Daniela Praher2, Ulrich Technau2.   

Abstract

microRNAs (miRNAs) are a unique class of short endogenous RNAs that became known in the last few decades as major players in gene regulation at the post-transcriptional level. Their regulatory roles make miRNAs crucial for normal development and physiology in several distinct groups of eukaryotes including plants and animals. The common notion in the field is that miRNAs have evolved independently in those distinct lineages, but recent evidence from non-bilaterian metazoans, plants, as well as various algae raise the possibility that already the last common ancestor of these lineages might have employed a miRNA pathway for post-transcriptional regulation. In this review we present the commonalities and differences of the miRNA pathways in various eukaryotes and discuss the contrasting scenarios of their possible evolutionary origin and their proposed link to organismal complexity and multicellularity.

Entities:  

Year:  2017        PMID: 28529980      PMCID: PMC5435108          DOI: 10.1038/s41559-016-0027

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  128 in total

1.  The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins.

Authors:  Fabien Burki; Noriko Okamoto; Jean-François Pombert; Patrick J Keeling
Journal:  Proc Biol Sci       Date:  2012-02-01       Impact factor: 5.349

Review 2.  Canalization of development by microRNAs.

Authors:  Eran Hornstein; Noam Shomron
Journal:  Nat Genet       Date:  2006-06       Impact factor: 38.330

3.  Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata.

Authors:  Srikar Krishna; Aparna Nair; Sirisha Cheedipudi; Deepak Poduval; Jyotsna Dhawan; Dasaradhi Palakodeti; Yashoda Ghanekar
Journal:  Nucleic Acids Res       Date:  2012-11-19       Impact factor: 16.971

4.  A hierarchy of regulatory genes controls a larva-to-adult developmental switch in C. elegans.

Authors:  V Ambros
Journal:  Cell       Date:  1989-04-07       Impact factor: 41.582

5.  MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Authors:  Noah Fahlgren; Sanjuro Jogdeo; Kristin D Kasschau; Christopher M Sullivan; Elisabeth J Chapman; Sascha Laubinger; Lisa M Smith; Mark Dasenko; Scott A Givan; Detlef Weigel; James C Carrington
Journal:  Plant Cell       Date:  2010-04-20       Impact factor: 11.277

6.  A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii.

Authors:  Tao Zhao; Guanglin Li; Shijun Mi; Shan Li; Gregory J Hannon; Xiu-Jie Wang; Yijun Qi
Journal:  Genes Dev       Date:  2007-04-30       Impact factor: 11.361

7.  Differential patterns of microRNA expression in neuroblastoma are correlated with prognosis, differentiation, and apoptosis.

Authors:  Yongxin Chen; Raymond L Stallings
Journal:  Cancer Res       Date:  2007-02-01       Impact factor: 12.701

8.  The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants.

Authors:  Sylwia Alaba; Pawel Piszczalka; Halina Pietrykowska; Andrzej M Pacak; Izabela Sierocka; Przemyslaw W Nuc; Kashmir Singh; Patrycja Plewka; Aleksandra Sulkowska; Artur Jarmolowski; Wojciech M Karlowski; Zofia Szweykowska-Kulinska
Journal:  New Phytol       Date:  2014-12-19       Impact factor: 10.151

9.  The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway.

Authors:  Andrea Hinas; Johan Reimegård; E Gerhart H Wagner; Wolfgang Nellen; Victor R Ambros; Fredrik Söderbom
Journal:  Nucleic Acids Res       Date:  2007-10-04       Impact factor: 16.971

10.  The evolution of microRNA pathway protein components in Cnidaria.

Authors:  Yehu Moran; Daniela Praher; David Fredman; Ulrich Technau
Journal:  Mol Biol Evol       Date:  2013-09-11       Impact factor: 16.240

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  58 in total

1.  Improved protein expression in HEK293 cells by over-expressing miR-22 and knocking-out its target gene, HIPK1.

Authors:  Sarah Inwood; Laura Abaandou; Michael Betenbaugh; Joseph Shiloach
Journal:  N Biotechnol       Date:  2019-08-16       Impact factor: 5.079

2.  LncRNA MALAT1 regulates trophoblast cells migration and invasion via miR-206/IGF-1 axis.

Authors:  Hai-Ying Wu; Xiao-Hui Wang; Kan Liu; Jing-Li Zhang
Journal:  Cell Cycle       Date:  2019-11-27       Impact factor: 4.534

3.  Computational prediction of miRNAs in Nipah virus genome reveals possible interaction with human genes involved in encephalitis.

Authors:  Sandeep Saini; Chander Jyoti Thakur; Varinder Kumar; Suchita Tandon; Varuni Bhardwaj; Sonia Maggar; Stanzin Namgyal; Gurpreet Kaur
Journal:  Mol Biol Res Commun       Date:  2018-09

Review 4.  Plant and Animal microRNAs (miRNAs) and Their Potential for Inter-kingdom Communication.

Authors:  Yuhai Zhao; Lin Cong; Walter J Lukiw
Journal:  Cell Mol Neurobiol       Date:  2017-09-06       Impact factor: 5.046

Review 5.  Regulation of airway immunity by epithelial miRNAs.

Authors:  Kristina Johansson; Prescott G Woodruff; Karl Mark Ansel
Journal:  Immunol Rev       Date:  2021-09-21       Impact factor: 10.983

Review 6.  Too Many False Targets for MicroRNAs: Challenges and Pitfalls in Prediction of miRNA Targets and Their Gene Ontology in Model and Non-model Organisms.

Authors:  Arie Fridrich; Yael Hazan; Yehu Moran
Journal:  Bioessays       Date:  2019-04       Impact factor: 4.345

7.  Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae).

Authors:  Armand Cavé-Radet; Delphine Giraud; Oscar Lima; Abdelhak El Amrani; Malika Aïnouche; Armel Salmon
Journal:  Plant Mol Biol       Date:  2019-11-20       Impact factor: 4.076

8.  Dissecting protein domain variability in the core RNA interference machinery of five insect orders.

Authors:  Fabricio Barbosa Monteiro Arraes; Diogo Martins-de-Sa; Daniel D Noriega Vasquez; Bruno Paes Melo; Muhammad Faheem; Leonardo Lima Pepino de Macedo; Carolina Vianna Morgante; Joao Alexandre R G Barbosa; Roberto Coiti Togawa; Valdeir Junio Vaz Moreira; Etienne G J Danchin; Maria Fatima Grossi-de-Sa
Journal:  RNA Biol       Date:  2020-12-31       Impact factor: 4.652

9.  Large-Scale Annotation and Evolution Analysis of MiRNA in Insects.

Authors:  Xingzhou Ma; Kang He; Zhenmin Shi; Meizhen Li; Fei Li; Xue-Xin Chen
Journal:  Genome Biol Evol       Date:  2021-05-07       Impact factor: 3.416

10.  Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture.

Authors:  Sylvie Gimenez; Imène Seninet; Marion Orsucci; Philippe Audiot; Nicolas Nègre; Kiwoong Nam; Réjane Streiff; Emmanuelle d'Alençon
Journal:  BMC Genomics       Date:  2021-08-09       Impact factor: 3.969

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