Literature DB >> 23629049

Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: a pilot project of the ENIGMA-DTI working group.

Neda Jahanshad1, Peter V Kochunov2, Emma Sprooten3, René C Mandl4, Thomas E Nichols5, Laura Almasy6, John Blangero6, Rachel M Brouwer4, Joanne E Curran6, Greig I de Zubicaray7, Ravi Duggirala6, Peter T Fox8, L Elliot Hong2, Bennett A Landman9, Nicholas G Martin10, Katie L McMahon11, Sarah E Medland10, Braxton D Mitchell12, Rene L Olvera13, Charles P Peterson6, John M Starr14, Jessika E Sussmann15, Arthur W Toga1, Joanna M Wardlaw16, Margaret J Wright10, Hilleke E Hulshoff Pol4, Mark E Bastin16, Andrew M McIntosh15, Ian J Deary14, Paul M Thompson17, David C Glahn18.   

Abstract

The ENIGMA (Enhancing NeuroImaging Genetics through Meta-Analysis) Consortium was set up to analyze brain measures and genotypes from multiple sites across the world to improve the power to detect genetic variants that influence the brain. Diffusion tensor imaging (DTI) yields quantitative measures sensitive to brain development and degeneration, and some common genetic variants may be associated with white matter integrity or connectivity. DTI measures, such as the fractional anisotropy (FA) of water diffusion, may be useful for identifying genetic variants that influence brain microstructure. However, genome-wide association studies (GWAS) require large populations to obtain sufficient power to detect and replicate significant effects, motivating a multi-site consortium effort. As part of an ENIGMA-DTI working group, we analyzed high-resolution FA images from multiple imaging sites across North America, Australia, and Europe, to address the challenge of harmonizing imaging data collected at multiple sites. Four hundred images of healthy adults aged 18-85 from four sites were used to create a template and corresponding skeletonized FA image as a common reference space. Using twin and pedigree samples of different ethnicities, we used our common template to evaluate the heritability of tract-derived FA measures. We show that our template is reliable for integrating multiple datasets by combining results through meta-analysis and unifying the data through exploratory mega-analyses. Our results may help prioritize regions of the FA map that are consistently influenced by additive genetic factors for future genetic discovery studies. Protocols and templates are publicly available at (http://enigma.loni.ucla.edu/ongoing/dti-working-group/).
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Diffusion Tensor Imaging (DTI); Heritability; Imaging genetics; Meta-analysis; Multi-site; Reliability

Mesh:

Year:  2013        PMID: 23629049      PMCID: PMC3729717          DOI: 10.1016/j.neuroimage.2013.04.061

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  81 in total

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2.  Gene network effects on brain microstructure and intellectual performance identified in 472 twins.

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Journal:  Neuroimage       Date:  2008-01-03       Impact factor: 6.556

4.  Genetic and environmental influences on impulsivity: a meta-analysis of twin, family and adoption studies.

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Journal:  Neuroimage       Date:  2010-12-30       Impact factor: 6.556

7.  Angular versus spatial resolution trade-offs for diffusion imaging under time constraints.

Authors:  Liang Zhan; Neda Jahanshad; Daniel B Ennis; Yan Jin; Matthew A Bernstein; Bret J Borowski; Clifford R Jack; Arthur W Toga; Alex D Leow; Paul M Thompson
Journal:  Hum Brain Mapp       Date:  2012-04-21       Impact factor: 5.038

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Authors:  Anna Barnes; Matti Isohanni; Jennifer H Barnett; Olli Pietiläinen; Juha Veijola; Jouko Miettunen; Tiina Paunio; Päivikki Tanskanen; Khanum Ridler; John Suckling; Edward T Bullmore; Peter B Jones; Graham K Murray
Journal:  Neuroimage       Date:  2011-10-13       Impact factor: 6.556

10.  Genetic analysis of cortical thickness and fractional anisotropy of water diffusion in the brain.

Authors:  Peter Kochunov; David C Glahn; Thomas E Nichols; Anderson M Winkler; Elliot L Hong; Henry H Holcomb; Jason L Stein; Paul M Thompson; Joanne E Curran; Melanie A Carless; Rene L Olvera; Matthew P Johnson; Shelley A Cole; Valeria Kochunov; Jack Kent; John Blangero
Journal:  Front Neurosci       Date:  2011-10-19       Impact factor: 4.677

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  204 in total

1.  Development of the brain's structural network efficiency in early adolescence: A longitudinal DTI twin study.

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Journal:  Hum Brain Mapp       Date:  2015-09-14       Impact factor: 5.038

2.  Harmonizing DTI measurements across scanners to examine the development of white matter microstructure in 803 adolescents of the NCANDA study.

Authors:  Kilian M Pohl; Edith V Sullivan; Torsten Rohlfing; Weiwei Chu; Dongjin Kwon; B Nolan Nichols; Yong Zhang; Sandra A Brown; Susan F Tapert; Kevin Cummins; Wesley K Thompson; Ty Brumback; Ian M Colrain; Fiona C Baker; Devin Prouty; Michael D De Bellis; James T Voyvodic; Duncan B Clark; Claudiu Schirda; Bonnie J Nagel; Adolf Pfefferbaum
Journal:  Neuroimage       Date:  2016-02-10       Impact factor: 6.556

3.  Accelerated white matter aging in schizophrenia: role of white matter blood perfusion.

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Journal:  Neurobiol Aging       Date:  2014-02-28       Impact factor: 4.673

Review 4.  Small vessel disease and memory loss: what the clinician needs to know to preserve patients' brain health.

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Review 5.  What is a representative brain? Neuroscience meets population science.

Authors:  Emily B Falk; Luke W Hyde; Colter Mitchell; Jessica Faul; Richard Gonzalez; Mary M Heitzeg; Daniel P Keating; Kenneth M Langa; Meghan E Martz; Julie Maslowsky; Frederick J Morrison; Douglas C Noll; Megan E Patrick; Fabian T Pfeffer; Patricia A Reuter-Lorenz; Moriah E Thomason; Pamela Davis-Kean; Christopher S Monk; John Schulenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-22       Impact factor: 11.205

Review 6.  Novel Neuroimaging Methods to Understand How HIV Affects the Brain.

Authors:  Paul M Thompson; Neda Jahanshad
Journal:  Curr HIV/AIDS Rep       Date:  2015-06       Impact factor: 5.071

7.  Characterizing white matter changes in chronic schizophrenia: A free-water imaging multi-site study.

Authors:  Lena K L Oestreich; Amanda E Lyall; Ofer Pasternak; Zora Kikinis; Dominick T Newell; Peter Savadjiev; Sylvain Bouix; Martha E Shenton; Marek Kubicki; Thomas J Whitford; Simon McCarthy-Jones
Journal:  Schizophr Res       Date:  2017-02-10       Impact factor: 4.939

8.  Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies.

Authors:  Peter Kochunov; Erin W Dickie; Joseph D Viviano; Jessica Turner; Peter B Kingsley; Neda Jahanshad; Paul M Thompson; Meghann C Ryan; Els Fieremans; Dmitry Novikov; Jelle Veraart; Elliot L Hong; Anil K Malhotra; Robert W Buchanan; Sofia Chavez; Aristotle N Voineskos
Journal:  Hum Brain Mapp       Date:  2017-11-27       Impact factor: 5.038

9.  Processing speed impairment in schizophrenia is mediated by white matter integrity.

Authors:  H Karbasforoushan; B Duffy; J U Blackford; N D Woodward
Journal:  Psychol Med       Date:  2014-05-15       Impact factor: 7.723

10.  A comprehensive tractography study of patients with bipolar disorder and their unaffected siblings.

Authors:  Emma Sprooten; Jennifer Barrett; D Reese McKay; Emma E Knowles; Samuel R Mathias; Anderson M Winkler; Margaret S Brumbaugh; Stefanie Landau; Lindsay Cyr; Peter Kochunov; David C Glahn
Journal:  Hum Brain Mapp       Date:  2016-05-16       Impact factor: 5.038

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