Literature DB >> 31907280

When Long Noncoding Becomes Protein Coding.

Corrine Corrina R Hartford1, Ashish Lal2.   

Abstract

Recent advancements in genetic and proteomic technologies have revealed that more of the genome encodes proteins than originally thought possible. Specifically, some putative long noncoding RNAs (lncRNAs) have been misannotated as noncoding. Numerous lncRNAs have been found to contain short open reading frames (sORFs) which have been overlooked because of their small size. Many of these sORFs encode small proteins or micropeptides with fundamental biological importance. These micropeptides can aid in diverse processes, including cell division, transcription regulation, and cell signaling. Here we discuss strategies for establishing the coding potential of putative lncRNAs and describe various functions of known micropeptides.

Entities:  

Keywords:  circRNA; coding potential; lncRNA; mRNA; micropeptides

Mesh:

Substances:

Year:  2020        PMID: 31907280      PMCID: PMC7048269          DOI: 10.1128/MCB.00528-19

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  60 in total

1.  Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

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Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

Review 2.  The complexity of the translation ability of circRNAs.

Authors:  Javier T Granados-Riveron; Guillermo Aquino-Jarquin
Journal:  Biochim Biophys Acta       Date:  2016-07-19

3.  Premature translational termination triggers mRNA decapping.

Authors:  D Muhlrad; R Parker
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

4.  Control of muscle formation by the fusogenic micropeptide myomixer.

Authors:  Pengpeng Bi; Andres Ramirez-Martinez; Hui Li; Jessica Cannavino; John R McAnally; John M Shelton; Efrain Sánchez-Ortiz; Rhonda Bassel-Duby; Eric N Olson
Journal:  Science       Date:  2017-04-06       Impact factor: 47.728

5.  Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment.

Authors:  A Nakamura; R Amikura; M Mukai; S Kobayashi; P F Lasko
Journal:  Science       Date:  1996-12-20       Impact factor: 47.728

6.  The histidine kinase inhibitor Sda binds near the site of autophosphorylation and may sterically hinder autophosphorylation and phosphotransfer to Spo0F.

Authors:  Katherine A Cunningham; William F Burkholder
Journal:  Mol Microbiol       Date:  2008-11-24       Impact factor: 3.501

Review 7.  RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts.

Authors:  Sarah Geisler; Jeff Coller
Journal:  Nat Rev Mol Cell Biol       Date:  2013-10-09       Impact factor: 94.444

8.  A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth.

Authors:  Jin-Zhou Huang; Min Chen; Xing-Cheng Gao; Song Zhu; Hongyang Huang; Min Hu; Huifang Zhu; Guang-Rong Yan
Journal:  Mol Cell       Date:  2017-10-05       Impact factor: 17.970

9.  Peptides encoded by short ORFs control development and define a new eukaryotic gene family.

Authors:  Máximo Ibo Galindo; José Ignacio Pueyo; Sylvaine Fouix; Sarah Anne Bishop; Juan Pablo Couso
Journal:  PLoS Biol       Date:  2007-05       Impact factor: 8.029

10.  LncRNA-Six1 Encodes a Micropeptide to Activate Six1 in Cis and Is Involved in Cell Proliferation and Muscle Growth.

Authors:  Bolin Cai; Zhenhui Li; Manting Ma; Zhijun Wang; Peigong Han; Bahareldin A Abdalla; Qinghua Nie; Xiquan Zhang
Journal:  Front Physiol       Date:  2017-04-20       Impact factor: 4.566

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  36 in total

1.  Experimental Validation of the Noncoding Potential for lncRNAs.

Authors:  Emily A Dangelmaier; Ashish Lal
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Small open reading frames in plant research: from prediction to functional characterization.

Authors:  Sheue Ni Ong; Boon Chin Tan; Aisyafaznim Al-Idrus; Chee How Teo
Journal:  3 Biotech       Date:  2022-02-24       Impact factor: 2.406

Review 3.  Long non-coding RNAs as possible therapeutic targets in protozoa, and in Schistosoma and other helminths.

Authors:  Gilbert O Silveira; Helena S Coelho; Murilo S Amaral; Sergio Verjovski-Almeida
Journal:  Parasitol Res       Date:  2021-12-03       Impact factor: 2.289

4.  Structured elements drive extensive circular RNA translation.

Authors:  Chun-Kan Chen; Ran Cheng; Janos Demeter; Jin Chen; Shira Weingarten-Gabbay; Lihua Jiang; Michael P Snyder; Jonathan S Weissman; Eran Segal; Peter K Jackson; Howard Y Chang
Journal:  Mol Cell       Date:  2021-08-25       Impact factor: 19.328

Review 5.  Interplay between host non-coding RNAs and influenza viruses.

Authors:  Gayan Bamunuarachchi; Samuel Pushparaj; Lin Liu
Journal:  RNA Biol       Date:  2021-01-18       Impact factor: 4.652

6.  Computational Analysis Predicts Hundreds of Coding lncRNAs in Zebrafish.

Authors:  Shital Kumar Mishra; Han Wang
Journal:  Biology (Basel)       Date:  2021-04-26

7.  A vast pool of lineage-specific microproteins encoded by long non-coding RNAs in plants.

Authors:  Igor Fesenko; Svetlana A Shabalina; Anna Mamaeva; Andrey Knyazev; Anna Glushkevich; Irina Lyapina; Rustam Ziganshin; Sergey Kovalchuk; Daria Kharlampieva; Vassili Lazarev; Michael Taliansky; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

Review 8.  Interrogating lncRNA functions via CRISPR/Cas systems.

Authors:  Meira S Zibitt; Corrine Corrina R Hartford; Ashish Lal
Journal:  RNA Biol       Date:  2021-03-26       Impact factor: 4.652

Review 9.  Brain Long Noncoding RNAs: Multitask Regulators of Neuronal Differentiation and Function.

Authors:  Sarva Keihani; Verena Kluever; Eugenio F Fornasiero
Journal:  Molecules       Date:  2021-06-28       Impact factor: 4.411

Review 10.  Emerging Role of Long Non-Coding RNAs in Diabetic Vascular Complications.

Authors:  Vinay Singh Tanwar; Marpadga A Reddy; Rama Natarajan
Journal:  Front Endocrinol (Lausanne)       Date:  2021-06-21       Impact factor: 5.555

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