Literature DB >> 28527344

Harnessing plant metabolic diversity.

Charlie Owen1, Nicola J Patron2, Ancheng Huang1, Anne Osbourn3.   

Abstract

Advances in DNA sequencing and synthesis technologies in the twenty-first century are now making it possible to build large-scale pipelines for engineering plant natural product pathways into heterologous production species using synthetic biology approaches. The ability to decode the chemical potential of plants by sequencing their transcriptomes and/or genomes and to then use this information as an instruction manual to make drugs and other high-value chemicals is opening up new routes to harness the vast chemical diversity of the Plant Kingdom. Here we describe recent progress in methods for pathway discovery, DNA synthesis and assembly, and expression of engineered pathways in heterologous hosts. We also highlight the importance of standardization and the challenges associated with dataset integration in the drive to build a systematic framework for effective harnessing of plant metabolic diversity.
Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2017        PMID: 28527344      PMCID: PMC5693780          DOI: 10.1016/j.cbpa.2017.04.015

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  55 in total

1.  Five hard truths for synthetic biology.

Authors:  Roberta Kwok
Journal:  Nature       Date:  2010-01-21       Impact factor: 49.962

2.  Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

Authors:  Nicola J Patron; Diego Orzaez; Sylvestre Marillonnet; Heribert Warzecha; Colette Matthewman; Mark Youles; Oleg Raitskin; Aymeric Leveau; Gemma Farré; Christian Rogers; Alison Smith; Julian Hibberd; Alex A R Webb; James Locke; Sebastian Schornack; Jim Ajioka; David C Baulcombe; Cyril Zipfel; Sophien Kamoun; Jonathan D G Jones; Hannah Kuhn; Silke Robatzek; H Peter Van Esse; Dale Sanders; Giles Oldroyd; Cathie Martin; Rob Field; Sarah O'Connor; Samantha Fox; Brande Wulff; Ben Miller; Andy Breakspear; Guru Radhakrishnan; Pierre-Marc Delaux; Dominique Loqué; Antonio Granell; Alain Tissier; Patrick Shih; Thomas P Brutnell; W Paul Quick; Heiko Rischer; Paul D Fraser; Asaph Aharoni; Christine Raines; Paul F South; Jean-Michel Ané; Björn R Hamberger; Jane Langdale; Jens Stougaard; Harro Bouwmeester; Michael Udvardi; James A H Murray; Vardis Ntoukakis; Patrick Schäfer; Katherine Denby; Keith J Edwards; Anne Osbourn; Jim Haseloff
Journal:  New Phytol       Date:  2015-07-14       Impact factor: 10.151

3.  Elucidation of the first committed step in betalain biosynthesis enables the heterologous engineering of betalain pigments in plants.

Authors:  Guy Polturak; Dario Breitel; Noam Grossman; Alejandro Sarrion-Perdigones; Efrat Weithorn; Margarita Pliner; Diego Orzaez; Antonio Granell; Ilana Rogachev; Asaph Aharoni
Journal:  New Phytol       Date:  2015-12-18       Impact factor: 10.151

4.  Investigation of terpene diversification across multiple sequenced plant genomes.

Authors:  Alexander M Boutanaev; Tessa Moses; Jiachen Zi; David R Nelson; Sam T Mugford; Reuben J Peters; Anne Osbourn
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-10       Impact factor: 11.205

5.  The cytochrome p450 homepage.

Authors:  David R Nelson
Journal:  Hum Genomics       Date:  2009-10       Impact factor: 4.639

6.  Biochemical analysis of a multifunctional cytochrome P450 (CYP51) enzyme required for synthesis of antimicrobial triterpenes in plants.

Authors:  Katrin Geisler; Richard K Hughes; Frank Sainsbury; George P Lomonossoff; Martin Rejzek; Shirley Fairhurst; Carl-Erik Olsen; Mohammed Saddik Motawia; Rachel E Melton; Andrew M Hemmings; Søren Bak; Anne Osbourn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

7.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

8.  PubChem's BioAssay Database.

Authors:  Yanli Wang; Jewen Xiao; Tugba O Suzek; Jian Zhang; Jiyao Wang; Zhigang Zhou; Lianyi Han; Karen Karapetyan; Svetlana Dracheva; Benjamin A Shoemaker; Evan Bolton; Asta Gindulyte; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

9.  The seco-iridoid pathway from Catharanthus roseus.

Authors:  Karel Miettinen; Lemeng Dong; Nicolas Navrot; Thomas Schneider; Vincent Burlat; Jacob Pollier; Lotte Woittiez; Sander van der Krol; Raphaël Lugan; Tina Ilc; Robert Verpoorte; Kirsi-Marja Oksman-Caldentey; Enrico Martinoia; Harro Bouwmeester; Alain Goossens; Johan Memelink; Danièle Werck-Reichhart
Journal:  Nat Commun       Date:  2014-04-07       Impact factor: 14.919

10.  Smart DNA Fabrication Using Sound Waves: Applying Acoustic Dispensing Technologies to Synthetic Biology.

Authors:  Paulina Kanigowska; Yue Shen; Yijing Zheng; Susan Rosser; Yizhi Cai
Journal:  J Lab Autom       Date:  2015-07-10
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  19 in total

Review 1.  Arabidopsis: the original plant chassis organism.

Authors:  Cynthia K Holland; Joseph M Jez
Journal:  Plant Cell Rep       Date:  2018-04-16       Impact factor: 4.570

Review 2.  Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.

Authors:  Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-09-26       Impact factor: 5.157

3.  Dynamics of the isoflavone metabolome of traditional preparations of Trifolium pratense L.

Authors:  Gonzalo R Malca-Garcia; Daniel Zagal; James Graham; Dejan Nikolić; J Brent Friesen; David C Lankin; Shao-Nong Chen; Guido F Pauli
Journal:  J Ethnopharmacol       Date:  2019-04-11       Impact factor: 4.360

Review 4.  Specialized metabolites as mediators for plant-fungus crosstalk and their evolving roles.

Authors:  Ayousha Shahi; Sibongile Mafu
Journal:  Curr Opin Plant Biol       Date:  2021-11-20       Impact factor: 7.834

5.  The use of ecological analytical tools as an unconventional approach for untargeted metabolomics data analysis: the case of Cecropia obtusifolia and its adaptive responses to nitrate starvation.

Authors:  Jorge David Cadena-Zamudio; Juan Luis Monribot-Villanueva; Claudia-Anahí Pérez-Torres; Fulgencio Alatorre-Cobos; Beatriz Jiménez-Moraila; José A Guerrero-Analco; Enrique Ibarra-Laclette
Journal:  Funct Integr Genomics       Date:  2022-10-06       Impact factor: 3.674

6.  The emerging role of biosynthetic gene clusters in plant defense and plant interactions.

Authors:  Guy Polturak; Anne Osbourn
Journal:  PLoS Pathog       Date:  2021-07-02       Impact factor: 6.823

7.  Metabolite signatures of grasspea suspension-cultured cells illustrate the complexity of dehydration response.

Authors:  Divya Rathi; Akanksha Pareek; Tong Zhang; Qiuying Pang; Sixue Chen; Subhra Chakraborty; Niranjan Chakraborty
Journal:  Planta       Date:  2019-06-15       Impact factor: 4.116

Review 8.  The Sweet Side of Plant-Specialized Metabolism.

Authors:  Thomas Louveau; Anne Osbourn
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-12-02       Impact factor: 9.708

9.  A translational synthetic biology platform for rapid access to gram-scale quantities of novel drug-like molecules.

Authors:  James Reed; Michael J Stephenson; Karel Miettinen; Bastiaan Brouwer; Aymeric Leveau; Paul Brett; Rebecca J M Goss; Alain Goossens; Maria A O'Connell; Anne Osbourn
Journal:  Metab Eng       Date:  2017-07-04       Impact factor: 8.829

10.  Engineering Betalain Biosynthesis in Tomato for High Level Betanin Production in Fruits.

Authors:  Ramona Grützner; Ramona Schubert; Claudia Horn; Changqing Yang; Thomas Vogt; Sylvestre Marillonnet
Journal:  Front Plant Sci       Date:  2021-06-09       Impact factor: 5.753

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