Literature DB >> 26171760

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

Nicola J Patron1,2, Diego Orzaez3, Sylvestre Marillonnet4, Heribert Warzecha5, Colette Matthewman2,6, Mark Youles1, Oleg Raitskin1,2, Aymeric Leveau6, Gemma Farré6, Christian Rogers6, Alison Smith2,7, Julian Hibberd2,7, Alex A R Webb2,7, James Locke2,8, Sebastian Schornack2,8, Jim Ajioka2,9, David C Baulcombe2,7, Cyril Zipfel1, Sophien Kamoun1, Jonathan D G Jones1, Hannah Kuhn1, Silke Robatzek1, H Peter Van Esse1, Dale Sanders2,6, Giles Oldroyd2,6, Cathie Martin2,6, Rob Field2,6, Sarah O'Connor2,6, Samantha Fox6, Brande Wulff6, Ben Miller6, Andy Breakspear6, Guru Radhakrishnan6, Pierre-Marc Delaux6, Dominique Loqué10,11, Antonio Granell3, Alain Tissier4, Patrick Shih10, Thomas P Brutnell12, W Paul Quick13, Heiko Rischer14, Paul D Fraser15, Asaph Aharoni16, Christine Raines17, Paul F South18, Jean-Michel Ané19, Björn R Hamberger20, Jane Langdale21, Jens Stougaard22, Harro Bouwmeester23, Michael Udvardi24, James A H Murray25, Vardis Ntoukakis26, Patrick Schäfer26, Katherine Denby26, Keith J Edwards27, Anne Osbourn2,6, Jim Haseloff2,7.   

Abstract

Inventors in the field of mechanical and electronic engineering can access multitudes of components and, thanks to standardization, parts from different manufacturers can be used in combination with each other. The introduction of BioBrick standards for the assembly of characterized DNA sequences was a landmark in microbial engineering, shaping the field of synthetic biology. Here, we describe a standard for Type IIS restriction endonuclease-mediated assembly, defining a common syntax of 12 fusion sites to enable the facile assembly of eukaryotic transcriptional units. This standard has been developed and agreed by representatives and leaders of the international plant science and synthetic biology communities, including inventors, developers and adopters of Type IIS cloning methods. Our vision is of an extensive catalogue of standardized, characterized DNA parts that will accelerate plant bioengineering.
© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Keywords:  DNA assembly; GoldenGate; Type IIS restriction endonucleases; cloning; genetic syntax; synthetic biology

Mesh:

Substances:

Year:  2015        PMID: 26171760     DOI: 10.1111/nph.13532

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  77 in total

1.  Cytokinin Biosynthesis Promotes Cortical Cell Responses during Nodule Development.

Authors:  Dugald Reid; Marcin Nadzieja; Ondřej Novák; Anne B Heckmann; Niels Sandal; Jens Stougaard
Journal:  Plant Physiol       Date:  2017-07-21       Impact factor: 8.340

Review 2.  The Synthetic Biology Toolkit for Photosynthetic Microorganisms.

Authors:  Konstantinos Vavitsas; Pierre Crozet; Marcos Hamborg Vinde; Fiona Davies; Stéphane D Lemaire; Claudia E Vickers
Journal:  Plant Physiol       Date:  2019-07-01       Impact factor: 8.340

3.  CyanoGate: A Modular Cloning Suite for Engineering Cyanobacteria Based on the Plant MoClo Syntax.

Authors:  Ravendran Vasudevan; Grant A R Gale; Alejandra A Schiavon; Anton Puzorjov; John Malin; Michael D Gillespie; Konstantinos Vavitsas; Valentin Zulkower; Baojun Wang; Christopher J Howe; David J Lea-Smith; Alistair J McCormick
Journal:  Plant Physiol       Date:  2019-02-28       Impact factor: 8.340

4.  NIN Acts as a Network Hub Controlling a Growth Module Required for Rhizobial Infection.

Authors:  Cheng-Wu Liu; Andrew Breakspear; Dian Guan; Marion R Cerri; Kirsty Jackson; Suyu Jiang; Fran Robson; Guru V Radhakrishnan; Sonali Roy; Caitlin Bone; Nicola Stacey; Christian Rogers; Martin Trick; Andreas Niebel; Giles E D Oldroyd; Fernanda de Carvalho-Niebel; Jeremy D Murray
Journal:  Plant Physiol       Date:  2019-02-01       Impact factor: 8.340

Review 5.  Synthetic Botany.

Authors:  Christian R Boehm; Bernardo Pollak; Nuri Purswani; Nicola Patron; Jim Haseloff
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-07-05       Impact factor: 10.005

Review 6.  Assessment of environmental and ergonomic hazard associated to printing and photocopying: a review.

Authors:  Abhishek Nandan; N A Siddiqui; Pankaj Kumar
Journal:  Environ Geochem Health       Date:  2018-10-22       Impact factor: 4.609

7.  Split-TALE: A TALE-Based Two-Component System for Synthetic Biology Applications in Planta.

Authors:  Tom Schreiber; Anja Prange; Tina Hoppe; Alain Tissier
Journal:  Plant Physiol       Date:  2019-01-14       Impact factor: 8.340

8.  Rapid Affinity Purification of Tagged Plant Mitochondria (Mito-AP) for Metabolome and Proteome Analyses.

Authors:  Markus Niehaus; Henryk Straube; Patrick Künzler; Nils Rugen; Jan Hegermann; Patrick Giavalisco; Holger Eubel; Claus-Peter Witte; Marco Herde
Journal:  Plant Physiol       Date:  2020-01-07       Impact factor: 8.340

Review 9.  Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.

Authors:  Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-09-26       Impact factor: 5.157

Review 10.  Towards a sustainable bio-based economy: Redirecting primary metabolism to new products with plant synthetic biology.

Authors:  Patrick M Shih
Journal:  Plant Sci       Date:  2018-03-14       Impact factor: 4.729

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