Literature DB >> 28527107

An Immune-Related Six-lncRNA Signature to Improve Prognosis Prediction of Glioblastoma Multiforme.

Meng Zhou1, Zhaoyue Zhang1, Hengqiang Zhao1, Siqi Bao1, Liang Cheng2, Jie Sun3.   

Abstract

Recent studies have demonstrated the utility and superiority of long non-coding RNAs (lncRNAs) as novel biomarkers for cancer diagnosis, prognosis, and therapy. In the present study, the prognostic value of lncRNAs in glioblastoma multiforme was systematically investigated by performing a genome-wide analysis of lncRNA expression profiles in 419 glioblastoma patients from The Cancer Genome Atlas (TCGA) project. Using survival analysis and Cox regression model, we identified a set of six lncRNAs (AC005013.5, UBE2R2-AS1, ENTPD1-AS1, RP11-89C21.2, AC073115.6, and XLOC_004803) demonstrating an ability to stratify patients into high- and low-risk groups with significantly different survival (median 0.899 vs. 1.611 years, p = 3.87e-09, log-rank test) in the training cohort. The six-lncRNA signature was successfully validated on independent test cohort of 219 patients with glioblastoma, and it revealed superior performance for risk stratification with respect to existing lncRNA-related signatures. Multivariate Cox and stratification analysis indicated that the six-lncRNA signature was an independent prognostic factor after adjusting for other clinical covariates. Further in silico functional analysis suggested that the six-lncRNA signature may be involved in the immune-related biological processes and pathways which are very well known in the context of glioblastoma tumorigenesis. The identified lncRNA signature had important clinical implication for improving outcome prediction and guiding the tailored therapy for glioblastoma patients with further prospective validation.

Entities:  

Keywords:  Glioblastoma multiforme; Immune; Long non-coding RNAs; Prognosis; Signature

Mesh:

Substances:

Year:  2017        PMID: 28527107     DOI: 10.1007/s12035-017-0572-9

Source DB:  PubMed          Journal:  Mol Neurobiol        ISSN: 0893-7648            Impact factor:   5.590


  55 in total

Review 1.  Evolution and functions of long noncoding RNAs.

Authors:  Chris P Ponting; Peter L Oliver; Wolf Reik
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

Review 2.  MEG3 noncoding RNA: a tumor suppressor.

Authors:  Yunli Zhou; Xun Zhang; Anne Klibanski
Journal:  J Mol Endocrinol       Date:  2012-04-02       Impact factor: 5.098

Review 3.  The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine.

Authors:  Peng Qi; Xiang Du
Journal:  Mod Pathol       Date:  2012-09-21       Impact factor: 7.842

4.  Enrichment map: a network-based method for gene-set enrichment visualization and interpretation.

Authors:  Daniele Merico; Ruth Isserlin; Oliver Stueker; Andrew Emili; Gary D Bader
Journal:  PLoS One       Date:  2010-11-15       Impact factor: 3.240

5.  Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma.

Authors:  Michele Ceccarelli; Floris P Barthel; Tathiane M Malta; Thais S Sabedot; Sofie R Salama; Bradley A Murray; Olena Morozova; Yulia Newton; Amie Radenbaugh; Stefano M Pagnotta; Samreen Anjum; Jiguang Wang; Ganiraju Manyam; Pietro Zoppoli; Shiyun Ling; Arjun A Rao; Mia Grifford; Andrew D Cherniack; Hailei Zhang; Laila Poisson; Carlos Gilberto Carlotti; Daniela Pretti da Cunha Tirapelli; Arvind Rao; Tom Mikkelsen; Ching C Lau; W K Alfred Yung; Raul Rabadan; Jason Huse; Daniel J Brat; Norman L Lehman; Jill S Barnholtz-Sloan; Siyuan Zheng; Kenneth Hess; Ganesh Rao; Matthew Meyerson; Rameen Beroukhim; Lee Cooper; Rehan Akbani; Margaret Wrensch; David Haussler; Kenneth D Aldape; Peter W Laird; David H Gutmann; Houtan Noushmehr; Antonio Iavarone; Roel G W Verhaak
Journal:  Cell       Date:  2016-01-28       Impact factor: 41.582

6.  The landscape of long noncoding RNAs in the human transcriptome.

Authors:  Matthew K Iyer; Yashar S Niknafs; Rohit Malik; Udit Singhal; Anirban Sahu; Yasuyuki Hosono; Terrence R Barrette; John R Prensner; Joseph R Evans; Shuang Zhao; Anton Poliakov; Xuhong Cao; Saravana M Dhanasekaran; Yi-Mi Wu; Dan R Robinson; David G Beer; Felix Y Feng; Hariharan K Iyer; Arul M Chinnaiyan
Journal:  Nat Genet       Date:  2015-01-19       Impact factor: 38.330

Review 7.  Emerging treatment strategies for glioblastoma multiforme.

Authors:  Steven K Carlsson; Shaun P Brothers; Claes Wahlestedt
Journal:  EMBO Mol Med       Date:  2014-11       Impact factor: 12.137

8.  Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma.

Authors:  Meng Zhou; Hengqiang Zhao; Wanying Xu; Siqi Bao; Liang Cheng; Jie Sun
Journal:  Mol Cancer       Date:  2017-01-19       Impact factor: 27.401

9.  Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Authors: 
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

10.  A long non-coding RNA signature to improve prognosis prediction of colorectal cancer.

Authors:  Ye Hu; Hao-Yan Chen; Chen-Yang Yu; Jie Xu; Ji-Lin Wang; Jin Qian; Xi Zhang; Jing-Yuan Fang
Journal:  Oncotarget       Date:  2014-04-30
View more
  101 in total

1.  A Prognostic Signature for Lower Grade Gliomas Based on Expression of Long Non-Coding RNAs.

Authors:  Manjari Kiran; Ajay Chatrath; Xiwei Tang; Daniel Macrae Keenan; Anindya Dutta
Journal:  Mol Neurobiol       Date:  2018-11-03       Impact factor: 5.590

2.  Long non-coding RNA H19 promotes the migration and invasion of colon cancer cells via MAPK signaling pathway.

Authors:  Weiwei Yang; Rajkumar Ezakiel Redpath; Chongyou Zhang; Ning Ning
Journal:  Oncol Lett       Date:  2018-06-29       Impact factor: 2.967

3.  Comment on "Altered Expression of Long Non-coding RNAs in Peripheral Blood Mononuclear Cells of Patients with Alzheimer's Disease".

Authors:  Yuqing Wang; Heng Zhao; Xiaoqiang Liu; Lei Yan
Journal:  Mol Neurobiol       Date:  2021-08-14       Impact factor: 5.590

4.  Identification of Four Enhancer-Associated Genes as Risk Signature for Diffuse Glioma Patients.

Authors:  Jiajia Wang; Xin Ma; Jie Ma
Journal:  J Mol Neurosci       Date:  2021-08-31       Impact factor: 3.444

5.  A novel RNA sequencing-based risk score model to predict papillary thyroid carcinoma recurrence.

Authors:  Jingni He; Zhong Tian; Xu Yao; Baiyu Yao; Yuan Liu; Jiapeng Yang
Journal:  Clin Exp Metastasis       Date:  2019-12-02       Impact factor: 5.150

6.  UBE2R2-AS1 Inhibits Xenograft Growth in Nude Mice and Correlates with a Positive Prognosis in Glioma.

Authors:  Wu Xu; Dan-Dan Che; Liang Chen; Sheng-Qing Lv; Jun Su; Jun Tan; Qing Liu; Ya-Wen Pan
Journal:  J Mol Neurosci       Date:  2021-02-02       Impact factor: 3.444

7.  Extracellular Matrix-Related Six-lncRNA Signature as a Novel Prognostic Biomarker for Bladder Cancer.

Authors:  Liangliang Qing; Peng Gu; Mingsheng Liu; Jihong Shen; Xiaodong Liu; Runyun Guang; Kunbin Ke; Zhuo Huang; Wenhui Lee; Hui Zhao
Journal:  Onco Targets Ther       Date:  2020-12-07       Impact factor: 4.147

Review 8.  Long non-coding RNAs in brain tumors: roles and potential as therapeutic targets.

Authors:  Sung-Hyun Kim; Key-Hwan Lim; Sumin Yang; Jae-Yeol Joo
Journal:  J Hematol Oncol       Date:  2021-05-12       Impact factor: 17.388

9.  An Immune-Related lncRNA Expression Profile to Improve Prognosis Prediction for Lung Adenocarcinoma: From Bioinformatics to Clinical Word.

Authors:  Boxiang Zhang; Rui Wang; Kai Li; Ziyang Peng; Dapeng Liu; Yunfeng Zhang; Liuzhi Zhou
Journal:  Front Oncol       Date:  2021-04-22       Impact factor: 6.244

10.  Development and Validation of an Immune-Related Long Non-coding RNA Prognostic Model in Glioma.

Authors:  Xiaowei Qiu; Yehong Tian; Jingnan Xu; Xin Jiang; Zeyu Liu; Xuewei Qi; Xin Chang; Jianxin Zhao; Jinchang Huang
Journal:  J Cancer       Date:  2021-05-19       Impact factor: 4.207

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.