Literature DB >> 29990897

Design, synthesis and activity of light deactivatable microRNA inhibitor.

Hao Yan1, Umesh Bhattarai1, Yabin Song1, Fu-Sen Liang2.   

Abstract

miRNAs are key cellular regulators and their dysregulation is associated with many human diseases. They are usually produced locally in a spatiotemporally controlled manner to target mRNAs and regulate gene expression. Thus, developing chemical tools for manipulating miRNA with spatiotemporal precise is critical for studying miRNA. Herein, we designed a strategy to control miRNA biogenesis with light controllable inhibitor targeting the pre-miRNA processing by Dicer. By conjugating two non-inhibiting units, a low affinity Dicer inhibitor and a pre-miRNA binder, through a photocleavable linker, the bifunctional molecule obtained could inhibit miRNA production. Taking advantage of the photocleavable property of the linker, the bifunctional inhibitor can be fragmented into separate non-inhibiting units and therefore be deactivated by light. We expect that this strategy could be applied to generate chemical biological tools that allow light-mediated spatiotemporal control of miRNA maturation and contribute to the study of miRNA function.
Copyright © 2018 Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29990897      PMCID: PMC6098719          DOI: 10.1016/j.bioorg.2018.07.003

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  26 in total

1.  In vivo structure-function analysis of human Dicer reveals directional processing of precursor miRNAs.

Authors:  Allan M Gurtan; Victoria Lu; Arjun Bhutkar; Phillip A Sharp
Journal:  RNA       Date:  2012-04-30       Impact factor: 4.942

2.  Light-controlled gene silencing in zebrafish embryos.

Authors:  Ilya A Shestopalov; Surajit Sinha; James K Chen
Journal:  Nat Chem Biol       Date:  2007-08-23       Impact factor: 15.040

Review 3.  Regulation of microRNA biogenesis.

Authors:  Minju Ha; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2014-07-16       Impact factor: 94.444

Review 4.  Photoremovable protecting groups in chemistry and biology: reaction mechanisms and efficacy.

Authors:  Petr Klán; Tomáš Šolomek; Christian G Bochet; Aurélien Blanc; Richard Givens; Marina Rubina; Vladimir Popik; Alexey Kostikov; Jakob Wirz
Journal:  Chem Rev       Date:  2012-12-21       Impact factor: 60.622

5.  Identification of tissue-specific microRNAs from mouse.

Authors:  Mariana Lagos-Quintana; Reinhard Rauhut; Abdullah Yalcin; Jutta Meyer; Winfried Lendeckel; Thomas Tuschl
Journal:  Curr Biol       Date:  2002-04-30       Impact factor: 10.834

6.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.

Authors:  Lee P Lim; Nelson C Lau; Philip Garrett-Engele; Andrew Grimson; Janell M Schelter; John Castle; David P Bartel; Peter S Linsley; Jason M Johnson
Journal:  Nature       Date:  2005-01-30       Impact factor: 49.962

7.  Light control of cellular processes by using photocaged abscisic acid.

Authors:  Catherine W Wright; Zhi-Fo Guo; Fu-Sen Liang
Journal:  Chembiochem       Date:  2014-12-21       Impact factor: 3.164

8.  Discovery of Inhibitors of MicroRNA-21 Processing Using Small Molecule Microarrays.

Authors:  Colleen M Connelly; Robert E Boer; Michelle H Moon; Peter Gareiss; John S Schneekloth
Journal:  ACS Chem Biol       Date:  2016-12-23       Impact factor: 5.100

9.  Optogenetic control of kinetochore function.

Authors:  Huaiying Zhang; Chanat Aonbangkhen; Ekaterina V Tarasovetc; Edward R Ballister; David M Chenoweth; Michael A Lampson
Journal:  Nat Chem Biol       Date:  2017-08-14       Impact factor: 15.040

10.  miTALOS v2: Analyzing Tissue Specific microRNA Function.

Authors:  Martin Preusse; Fabian J Theis; Nikola S Mueller
Journal:  PLoS One       Date:  2016-03-21       Impact factor: 3.240

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  6 in total

1.  miRNA inhibition by proximity-enabled Dicer inactivation.

Authors:  Hao Yan; Fu-Sen Liang
Journal:  Methods       Date:  2019-05-09       Impact factor: 3.608

2.  Precise Small Molecule Degradation of a Noncoding RNA Identifies Cellular Binding Sites and Modulates an Oncogenic Phenotype.

Authors:  Yue Li; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2018-10-30       Impact factor: 5.100

3.  Deactivatable Bisubstrate Inhibitors of Protein Kinases.

Authors:  Tanel Sõrmus; Darja Lavogina; Erki Enkvist; Asko Uri; Kaido Viht
Journal:  Molecules       Date:  2022-10-08       Impact factor: 4.927

4.  High-Throughput Amenable MALDI-MS Detection of RNA and DNA with On-Surface Analyte Enrichment Using Fluorous Partitioning.

Authors:  Cole Emanuelson; Nicholas Ankenbruck; Alexander Deiters; Marvin S Yu
Journal:  SLAS Discov       Date:  2020-09-29       Impact factor: 3.341

5.  Bifunctional small molecule-oligonucleotide hybrid as microRNA inhibitor.

Authors:  Umesh Bhattarai; Wei-Che Hsieh; Hao Yan; Zhi-Fo Guo; Ashif Yasin Shaikh; Aria Soltani; Yabin Song; Danith H Ly; Fu-Sen Liang
Journal:  Bioorg Med Chem       Date:  2020-02-18       Impact factor: 3.461

Review 6.  Noncoding RNA therapeutics - challenges and potential solutions.

Authors:  Melanie Winkle; Sherien M El-Daly; Muller Fabbri; George A Calin
Journal:  Nat Rev Drug Discov       Date:  2021-06-18       Impact factor: 84.694

  6 in total

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