Literature DB >> 17930555

Solvation of proteins: linking thermodynamics to geometry.

Hendrik Hansen-Goos1, Roland Roth, Klaus Mecke, S Dietrich.   

Abstract

We calculate the solvation free energy of proteins in the tube model of Banavar and Maritan [Rev. Mod. Phys. 75, 23 (2003)10.1103/RevModPhys.75.23] using morphological thermodynamics which is based on Hadwiger's theorem of integral geometry. Thereby we extend recent results by Snir and Kamien [Science 307, 1067 (2005)10.1126/science.1106243] to hard-sphere solvents at finite packing fractions and obtain new conclusions. Depending on the solvent properties, parameter regions are identified where the beta sheet, the optimal helix, or neither is favored.

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Year:  2007        PMID: 17930555     DOI: 10.1103/PhysRevLett.99.128101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders.

Authors:  Jeetain Mittal; Robert B Best
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

2.  Tautomers and reference 3D-structures: the orphans of in silico drug design.

Authors:  Timothy Clark
Journal:  J Comput Aided Mol Des       Date:  2010-03-27       Impact factor: 3.686

3.  Structural motifs of biomolecules.

Authors:  Jayanth R Banavar; Trinh Xuan Hoang; John H Maddocks; Amos Maritan; Chiara Poletto; Andrzej Stasiak; Antonio Trovato
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

4.  Ground-state properties of tubelike flexible polymers.

Authors:  T Vogel; T Neuhaus; M Bachmann; W Janke
Journal:  Eur Phys J E Soft Matter       Date:  2009-09-24       Impact factor: 1.890

5.  Chiral twist drives raft formation and organization in membranes composed of rod-like particles.

Authors:  Louis Kang; Tom C Lubensky
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-20       Impact factor: 11.205

Review 6.  A new theoretical approach to biological self-assembly.

Authors:  Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2013-02-01

Review 7.  Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes.

Authors:  Kieran Finan; Peter R Cook; Davide Marenduzzo
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

8.  Thermodynamics of interfaces extended to nanoscales by introducing integral and differential surface tensions.

Authors:  W Dong
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-19       Impact factor: 12.779

9.  Dewetting-controlled binding of ligands to hydrophobic pockets.

Authors:  P Setny; Z Wang; L-T Cheng; B Li; J A McCammon; J Dzubiella
Journal:  Phys Rev Lett       Date:  2009-10-30       Impact factor: 9.161

  9 in total

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