Literature DB >> 28494316

Combinatorial chemistry in drug discovery.

Ruiwu Liu1, Xiaocen Li1, Kit S Lam2.   

Abstract

Several combinatorial methods have been developed to create focused or diverse chemical libraries with a wide range of linear or macrocyclic chemical molecules: peptides, non-peptide oligomers, peptidomimetics, small-molecules, and natural product-like organic molecules. Each combinatorial approach has its own unique high-throughput screening and encoding strategy. In this article, we provide a brief overview of combinatorial chemistry in drug discovery with emphasis on recently developed new technologies for design, synthesis, screening and decoding of combinatorial library. Examples of successful application of combinatorial chemistry in hit discovery and lead optimization are given. The limitations and strengths of combinatorial chemistry are also briefly discussed. We are now in a better position to truly leverage the power of combinatorial technologies for the discovery and development of next-generation drugs.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28494316      PMCID: PMC5645069          DOI: 10.1016/j.cbpa.2017.03.017

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  64 in total

1.  A novel and rapid encoding method based on mass spectrometry for "one-bead-one-compound" small molecule combinatorial libraries.

Authors:  Aimin Song; Jinhua Zhang; Carlito B Lebrilla; Kit S Lam
Journal:  J Am Chem Soc       Date:  2003-05-21       Impact factor: 15.419

2.  A new type of synthetic peptide library for identifying ligand-binding activity.

Authors:  K S Lam; S E Salmon; E M Hersh; V J Hruby; W M Kazmierski; R J Knapp
Journal:  Nature       Date:  1991-11-07       Impact factor: 49.962

3.  General method for the rapid solid-phase synthesis of large numbers of peptides: specificity of antigen-antibody interaction at the level of individual amino acids.

Authors:  R A Houghten
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

4.  Fragment-based lead discovery grows up.

Authors:  Monya Baker
Journal:  Nat Rev Drug Discov       Date:  2013-01       Impact factor: 84.694

Review 5.  Fragment screening by SPR and advanced application to GPCRs.

Authors:  Claire A Shepherd; Andrew L Hopkins; Iva Navratilova
Journal:  Prog Biophys Mol Biol       Date:  2014-10-06       Impact factor: 3.667

Review 6.  Cyclotides, a novel ultrastable polypeptide scaffold for drug discovery.

Authors:  Andrew Gould; Yanbin Ji; Teshome L Aboye; Julio A Camarero
Journal:  Curr Pharm Des       Date:  2011-12       Impact factor: 3.116

7.  Biosynthesis and biological screening of a genetically encoded library based on the cyclotide MCoTI-I.

Authors:  Jeffrey Austin; Wan Wang; Swamy Puttamadappa; Alexander Shekhtman; Julio A Camarero
Journal:  Chembiochem       Date:  2009-11-02       Impact factor: 3.164

Review 8.  Tumor-targeting peptides from combinatorial libraries.

Authors:  Ruiwu Liu; Xiaocen Li; Wenwu Xiao; Kit S Lam
Journal:  Adv Drug Deliv Rev       Date:  2016-05-19       Impact factor: 15.470

9.  A Wide-Field Fluorescence Microscope Extension for Ultrafast Screening of One-Bead One-Compound Libraries Using a Spectral Image Subtraction Approach.

Authors:  Wolf Heusermann; Beat Ludin; Nhan T Pham; Manfred Auer; Thomas Weidemann; Martin Hintersteiner
Journal:  ACS Comb Sci       Date:  2016-04-21       Impact factor: 3.784

10.  Direct identification of on-bead peptides using surface-enhanced Raman spectroscopic barcoding system for high-throughput bioanalysis.

Authors:  Homan Kang; Sinyoung Jeong; Yul Koh; Myeong Geun Cha; Jin-Kyoung Yang; San Kyeong; Jaehi Kim; Seon-Yeong Kwak; Hye-Jin Chang; Hyunmi Lee; Cheolhwan Jeong; Jong-Ho Kim; Bong-Hyun Jun; Yong-Kweon Kim; Dae Hong Jeong; Yoon-Sik Lee
Journal:  Sci Rep       Date:  2015-05-28       Impact factor: 4.379

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  41 in total

1.  Stereo- and regiodefined DNA-encoded chemical libraries enable efficient tumour-targeting applications.

Authors:  Nicholas Favalli; Gabriele Bassi; Christian Pellegrino; Jacopo Millul; Roberto De Luca; Samuele Cazzamalli; Su Yang; Anika Trenner; Nour L Mozaffari; Renier Myburgh; Mustafa Moroglu; Stuart J Conway; Alessandro A Sartori; Markus G Manz; Richard A Lerner; Peter K Vogt; Jörg Scheuermann; Dario Neri
Journal:  Nat Chem       Date:  2021-04-08       Impact factor: 24.427

2.  In-solution enrichment identifies peptide inhibitors of protein-protein interactions.

Authors:  Fayçal Touti; Zachary P Gates; Anupam Bandyopadhyay; Guillaume Lautrette; Bradley L Pentelute
Journal:  Nat Chem Biol       Date:  2019-03-18       Impact factor: 15.040

3.  Discovery of Nucleic Acid Binding Molecules from Combinatorial Biohybrid Nucleobase Peptide Libraries.

Authors:  Sebastian Pomplun; Zachary P Gates; Genwei Zhang; Anthony J Quartararo; Bradley L Pentelute
Journal:  J Am Chem Soc       Date:  2020-11-09       Impact factor: 15.419

Review 4.  Automating drug discovery.

Authors:  Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2017-12-15       Impact factor: 84.694

5.  Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity.

Authors:  Rafal Dolot; Curtis H Lam; Malgorzata Sierant; Qiang Zhao; Feng-Wu Liu; Barbara Nawrot; Martin Egli; Xianbin Yang
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

Review 6.  Big Data and Artificial Intelligence Modeling for Drug Discovery.

Authors:  Hao Zhu
Journal:  Annu Rev Pharmacol Toxicol       Date:  2019-09-13       Impact factor: 13.820

7.  Developments with bead-based screening for novel drug discovery.

Authors:  Dehua Pei; George Appiah Kubi
Journal:  Expert Opin Drug Discov       Date:  2019-07-23       Impact factor: 6.098

Review 8.  Tackling tumor heterogeneity and phenotypic plasticity in cancer precision medicine: our experience and a literature review.

Authors:  Shijie Sheng; M Margarida Bernardo; Sijana H Dzinic; Kang Chen; Elisabeth I Heath; Wael A Sakr
Journal:  Cancer Metastasis Rev       Date:  2018-12       Impact factor: 9.264

Review 9.  Synthetic evolution.

Authors:  Anna J Simon; Simon d'Oelsnitz; Andrew D Ellington
Journal:  Nat Biotechnol       Date:  2019-06-17       Impact factor: 54.908

Review 10.  DNA-encoded chemical libraries - achievements and remaining challenges.

Authors:  Nicholas Favalli; Gabriele Bassi; Jörg Scheuermann; Dario Neri
Journal:  FEBS Lett       Date:  2018-05-10       Impact factor: 4.124

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