Literature DB >> 28493174

Genomics, transcriptomics and proteomics to elucidate the pathogenesis of rheumatoid arthritis.

Xinqiang Song1,2, Qingsong Lin3.   

Abstract

Rheumatoid arthritis is an autoimmune disease that affects several organs and tissues, predominantly the synovial joints. The pathogenesis of this disease is not completely understood, which maybe involved in the genomic variations, gene expression, protein translation and post-translational modifications. These system variations in genomics, transcriptomics and proteomics are dynamic in nature and their crosstalk is overwhelmingly complex, thus analyzing them separately may not be very informative. However, various '-omics' techniques developed in recent years have opened up new possibilities for clarifying disease pathways and thereby facilitating early diagnosis and specific therapies. This review examines how recent advances in the fields of genomics, transcriptomics and proteomics have contributed to our understanding of rheumatoid arthritis.

Entities:  

Keywords:  Genomics; Omics; Proteomics; Rheumatoid arthritis; Transcriptomics

Mesh:

Substances:

Year:  2017        PMID: 28493174     DOI: 10.1007/s00296-017-3732-3

Source DB:  PubMed          Journal:  Rheumatol Int        ISSN: 0172-8172            Impact factor:   2.631


  64 in total

1.  Cutting edge: the PTPN22 allelic variant associated with autoimmunity impairs B cell signaling.

Authors:  Adrian F Arechiga; Tania Habib; Yantao He; Xian Zhang; Zhong-Yin Zhang; Andrew Funk; Jane H Buckner
Journal:  J Immunol       Date:  2009-03-15       Impact factor: 5.422

2.  Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.

Authors:  Yukinori Okada; Chikashi Terao; Katsunori Ikari; Yuta Kochi; Koichiro Ohmura; Akari Suzuki; Takahisa Kawaguchi; Eli A Stahl; Fina A S Kurreeman; Nao Nishida; Hiroko Ohmiya; Keiko Myouzen; Meiko Takahashi; Tetsuji Sawada; Yuichi Nishioka; Masao Yukioka; Tsukasa Matsubara; Shigeyuki Wakitani; Ryota Teshima; Shigeto Tohma; Kiyoshi Takasugi; Kota Shimada; Akira Murasawa; Shigeru Honjo; Keitaro Matsuo; Hideo Tanaka; Kazuo Tajima; Taku Suzuki; Takuji Iwamoto; Yoshiya Kawamura; Hisashi Tanii; Yuji Okazaki; Tsukasa Sasaki; Peter K Gregersen; Leonid Padyukov; Jane Worthington; Katherine A Siminovitch; Mark Lathrop; Atsuo Taniguchi; Atsushi Takahashi; Katsushi Tokunaga; Michiaki Kubo; Yusuke Nakamura; Naoyuki Kamatani; Tsuneyo Mimori; Robert M Plenge; Hisashi Yamanaka; Shigeki Momohara; Ryo Yamada; Fumihiko Matsuda; Kazuhiko Yamamoto
Journal:  Nat Genet       Date:  2012-03-25       Impact factor: 38.330

Review 3.  Integrating transcriptome and proteome profiling: Strategies and applications.

Authors:  Dhirendra Kumar; Gourja Bansal; Ankita Narang; Trayambak Basak; Tahseen Abbas; Debasis Dash
Journal:  Proteomics       Date:  2016-08-25       Impact factor: 3.984

4.  Proteomic analysis of bone marrow-adherent cells in rheumatoid arthritis and osteoarthritis.

Authors:  Toshikazu Kamada; Manae S Kurokawa; Tomohiro Kato; Kenji Takenouchi; Kenji Takahashi; Takuya Yoshioka; Teisuke Uchida; Hiroyuki Mitsui; Naoya Suematsu; Kazuki Okamoto; Kazuo Yudo; Yasuo Katayama; Hiroshi Nakamura
Journal:  Int J Rheum Dis       Date:  2012-02-13       Impact factor: 2.454

5.  Functional, molecular and proteomic characterisation of bone marrow mesenchymal stem cells in rheumatoid arthritis.

Authors:  M-C Kastrinaki; P Sidiropoulos; S Roche; J Ringe; S Lehmann; H Kritikos; V-M Vlahava; B Delorme; G D Eliopoulos; C Jorgensen; P Charbord; T Häupl; D T Boumpas; H A Papadaki
Journal:  Ann Rheum Dis       Date:  2007-10-05       Impact factor: 19.103

6.  A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis.

Authors:  Ann B Begovich; Victoria E H Carlton; Lee A Honigberg; Steven J Schrodi; Anand P Chokkalingam; Heather C Alexander; Kristin G Ardlie; Qiqing Huang; Ashley M Smith; Jill M Spoerke; Marion T Conn; Monica Chang; Sheng-Yung P Chang; Randall K Saiki; Joseph J Catanese; Diane U Leong; Veronica E Garcia; Linda B McAllister; Douglas A Jeffery; Annette T Lee; Franak Batliwalla; Elaine Remmers; Lindsey A Criswell; Michael F Seldin; Daniel L Kastner; Christopher I Amos; John J Sninsky; Peter K Gregersen
Journal:  Am J Hum Genet       Date:  2004-06-18       Impact factor: 11.025

7.  Cutting edge: autoimmune disease risk variant of STAT4 confers increased sensitivity to IFN-alpha in lupus patients in vivo.

Authors:  Silvia N Kariuki; Kyriakos A Kirou; Emma J MacDermott; Lilliana Barillas-Arias; Mary K Crow; Timothy B Niewold
Journal:  J Immunol       Date:  2009-01-01       Impact factor: 5.422

8.  Blood cell gene expression profiling in rheumatoid arthritis. Discriminative genes and effect of rheumatoid factor.

Authors:  Lone Frier Bovin; Klaus Rieneck; Christopher Workman; Henrik Nielsen; Søren Freiesleben Sørensen; Henrik Skjødt; Adrian Florescu; Søren Brunak; Klaus Bendtzen
Journal:  Immunol Lett       Date:  2004-05-15       Impact factor: 3.685

9.  Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis.

Authors:  Soumya Raychaudhuri; Cynthia Sandor; Eli A Stahl; Jan Freudenberg; Hye-Soon Lee; Xiaoming Jia; Lars Alfredsson; Leonid Padyukov; Lars Klareskog; Jane Worthington; Katherine A Siminovitch; Sang-Cheol Bae; Robert M Plenge; Peter K Gregersen; Paul I W de Bakker
Journal:  Nat Genet       Date:  2012-01-29       Impact factor: 38.330

10.  CD4 T-cell transcriptome analysis reveals aberrant regulation of STAT3 and Wnt signaling pathways in rheumatoid arthritis: evidence from a case-control study.

Authors:  Hua Ye; Jing Zhang; Jun Wang; Yanyan Gao; Yan Du; Chun Li; Minghua Deng; Jianping Guo; Zhanguo Li
Journal:  Arthritis Res Ther       Date:  2015-03-22       Impact factor: 5.156

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  14 in total

1.  [Methylation status and expression of TWEAK gene promoter region in peripheral blood of patients with rheumatoid arthritis].

Authors:  X Lou; L Liao; X J Li; N Wang; S Liu; R M Cui; J Xu
Journal:  Beijing Da Xue Xue Bao Yi Xue Ban       Date:  2021-12-18

2.  RNA-seq and Network Analysis Reveal Unique Chemokine Activity Signatures in the Synovial Tissue of Patients With Rheumatoid Arthritis.

Authors:  Runrun Zhang; Yehua Jin; Cen Chang; Lingxia Xu; Yanqin Bian; Yu Shen; Yang Sun; Songtao Sun; Steven J Schrodi; Shicheng Guo; Dongyi He
Journal:  Front Med (Lausanne)       Date:  2022-05-04

3.  CKS2 and S100A12: Two Novel Diagnostic Biomarkers for Rheumatoid Arthritis.

Authors:  Zhi-Wen Wang; Li-Jun Zhang; Yu Zhuang; Zhi-Fen Lv; Zhi-Ming Tan
Journal:  Dis Markers       Date:  2022-06-25       Impact factor: 3.464

4.  Identification of Critical Biomarkers and Immune Infiltration in Rheumatoid Arthritis Based on WGCNA and LASSO Algorithm.

Authors:  Fan Jiang; Hongyi Zhou; Haili Shen
Journal:  Front Immunol       Date:  2022-06-29       Impact factor: 8.786

5.  Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes.

Authors:  Rizi Ai; Teresina Laragione; Deepa Hammaker; David L Boyle; Andre Wildberg; Keisuke Maeshima; Emanuele Palescandolo; Vinod Krishna; David Pocalyko; John W Whitaker; Yuchen Bai; Sunil Nagpal; Kurtis E Bachman; Richard I Ainsworth; Mengchi Wang; Bo Ding; Percio S Gulko; Wei Wang; Gary S Firestein
Journal:  Nat Commun       Date:  2018-05-15       Impact factor: 14.919

6.  Potential mechanisms of action of celastrol against rheumatoid arthritis: Transcriptomic and proteomic analysis.

Authors:  Song Xinqiang; Dai Erqin; Zhang Yu; Du Hongtao; Wang Lei; Yang Ningning
Journal:  PLoS One       Date:  2020-07-29       Impact factor: 3.240

7.  LncRNA MEG3 inhibits rheumatoid arthritis through miR-141 and inactivation of AKT/mTOR signalling pathway.

Authors:  Guoqing Li; Ying Liu; Fanru Meng; Zhongbin Xia; Xia Wu; Yuxuan Fang; Chunwang Zhang; Yu Zhang; Dan Liu
Journal:  J Cell Mol Med       Date:  2019-08-14       Impact factor: 5.310

8.  Coupling of Co-expression Network Analysis and Machine Learning Validation Unearthed Potential Key Genes Involved in Rheumatoid Arthritis.

Authors:  Jianwei Xiao; Rongsheng Wang; Xu Cai; Zhizhong Ye
Journal:  Front Genet       Date:  2021-02-11       Impact factor: 4.599

9.  The Efficacy of Antioxidative Stress Therapy on Oxidative Stress Levels in Rheumatoid Arthritis: A Systematic Review and Meta-analysis of Randomized Controlled Trials.

Authors:  Liuting Zeng; Ganpeng Yu; Kailin Yang; Jun Li; Wensa Hao; Hua Chen
Journal:  Oxid Med Cell Longev       Date:  2021-10-07       Impact factor: 6.543

10.  Effects of a 15-month anti-TNF-α treatment on plasma levels of glycosaminoglycans in women with rheumatoid arthritis.

Authors:  Anna Szeremeta; Agnieszka Jura-Półtorak; Ewa Maria Koźma; Andrzej Głowacki; Eugeniusz Józef Kucharz; Magdalena Kopeć-Mędrek; Krystyna Olczyk
Journal:  Arthritis Res Ther       Date:  2018-09-18       Impact factor: 5.156

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