Literature DB >> 22446963

Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.

Yukinori Okada1, Chikashi Terao, Katsunori Ikari, Yuta Kochi, Koichiro Ohmura, Akari Suzuki, Takahisa Kawaguchi, Eli A Stahl, Fina A S Kurreeman, Nao Nishida, Hiroko Ohmiya, Keiko Myouzen, Meiko Takahashi, Tetsuji Sawada, Yuichi Nishioka, Masao Yukioka, Tsukasa Matsubara, Shigeyuki Wakitani, Ryota Teshima, Shigeto Tohma, Kiyoshi Takasugi, Kota Shimada, Akira Murasawa, Shigeru Honjo, Keitaro Matsuo, Hideo Tanaka, Kazuo Tajima, Taku Suzuki, Takuji Iwamoto, Yoshiya Kawamura, Hisashi Tanii, Yuji Okazaki, Tsukasa Sasaki, Peter K Gregersen, Leonid Padyukov, Jane Worthington, Katherine A Siminovitch, Mark Lathrop, Atsuo Taniguchi, Atsushi Takahashi, Katsushi Tokunaga, Michiaki Kubo, Yusuke Nakamura, Naoyuki Kamatani, Tsuneyo Mimori, Robert M Plenge, Hisashi Yamanaka, Shigeki Momohara, Ryo Yamada, Fumihiko Matsuda, Kazuhiko Yamamoto.   

Abstract

Rheumatoid arthritis is a common autoimmune disease characterized by chronic inflammation. We report a meta-analysis of genome-wide association studies (GWAS) in a Japanese population including 4,074 individuals with rheumatoid arthritis (cases) and 16,891 controls, followed by a replication in 5,277 rheumatoid arthritis cases and 21,684 controls. Our study identified nine loci newly associated with rheumatoid arthritis at a threshold of P < 5.0 × 10(-8), including B3GNT2, ANXA3, CSF2, CD83, NFKBIE, ARID5B, PDE2A-ARAP1, PLD4 and PTPN2. ANXA3 was also associated with susceptibility to systemic lupus erythematosus (P = 0.0040), and B3GNT2 and ARID5B were associated with Graves' disease (P = 3.5 × 10(-4) and 2.9 × 10(-4), respectively). We conducted a multi-ancestry comparative analysis with a previous meta-analysis in individuals of European descent (5,539 rheumatoid arthritis cases and 20,169 controls). This provided evidence of shared genetic risks of rheumatoid arthritis between the populations.

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Year:  2012        PMID: 22446963     DOI: 10.1038/ng.2231

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  28 in total

1.  A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.

Authors:  Yuta Kochi; Yukinori Okada; Akari Suzuki; Katsunori Ikari; Chikashi Terao; Atsushi Takahashi; Keiko Yamazaki; Naoya Hosono; Keiko Myouzen; Tatsuhiko Tsunoda; Naoyuki Kamatani; Tatsuya Furuichi; Shiro Ikegawa; Koichiro Ohmura; Tsuneyo Mimori; Fumihiko Matsuda; Takuji Iwamoto; Shigeki Momohara; Hisashi Yamanaka; Ryo Yamada; Michiaki Kubo; Yusuke Nakamura; Kazuhiko Yamamoto
Journal:  Nat Genet       Date:  2010-05-09       Impact factor: 38.330

2.  Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.

Authors:  Robert M Plenge; Chris Cotsapas; Leela Davies; Alkes L Price; Paul I W de Bakker; Julian Maller; Itsik Pe'er; Noel P Burtt; Brendan Blumenstiel; Matt DeFelice; Melissa Parkin; Rachel Barry; Wendy Winslow; Claire Healy; Robert R Graham; Benjamin M Neale; Elena Izmailova; Ronenn Roubenoff; Alexander N Parker; Roberta Glass; Elizabeth W Karlson; Nancy Maher; David A Hafler; David M Lee; Michael F Seldin; Elaine F Remmers; Annette T Lee; Leonid Padyukov; Lars Alfredsson; Jonathan Coblyn; Michael E Weinblatt; Stacey B Gabriel; Shaun Purcell; Lars Klareskog; Peter K Gregersen; Nancy A Shadick; Mark J Daly; David Altshuler
Journal:  Nat Genet       Date:  2007-11-04       Impact factor: 38.330

Review 3.  The BioBank Japan Project.

Authors:  Yusuke Nakamura
Journal:  Clin Adv Hematol Oncol       Date:  2007-09

4.  A functional variant in FCRL3, encoding Fc receptor-like 3, is associated with rheumatoid arthritis and several autoimmunities.

Authors:  Yuta Kochi; Ryo Yamada; Akari Suzuki; John B Harley; Senji Shirasawa; Tetsuji Sawada; Sang-Cheol Bae; Shinya Tokuhiro; Xiaotian Chang; Akihiro Sekine; Atsushi Takahashi; Tatsuhiko Tsunoda; Yozo Ohnishi; Kenneth M Kaufman; Changsoo Paul Kang; Changwon Kang; Shigeru Otsubo; Wako Yumura; Akio Mimori; Takao Koike; Yusuke Nakamura; Takehiko Sasazuki; Kazuhiko Yamamoto
Journal:  Nat Genet       Date:  2005-04-17       Impact factor: 38.330

5.  The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.

Authors:  Chikashi Terao; Ryo Yamada; Koichiro Ohmura; Meiko Takahashi; Takahisa Kawaguchi; Yuta Kochi; Yukinori Okada; Yusuke Nakamura; Kazuhiko Yamamoto; Inga Melchers; Mark Lathrop; Tsuneyo Mimori; Fumihiko Matsuda
Journal:  Hum Mol Genet       Date:  2011-04-19       Impact factor: 6.150

6.  A single nucleotide polymorphism in the IRF5 promoter region is associated with susceptibility to rheumatoid arthritis in the Japanese population.

Authors:  K Shimane; Y Kochi; R Yamada; Y Okada; A Suzuki; A Miyatake; M Kubo; Y Nakamura; K Yamamoto
Journal:  Ann Rheum Dis       Date:  2008-04-13       Impact factor: 19.103

7.  Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.

Authors:  Alexandra Zhernakova; Eli A Stahl; Gosia Trynka; Soumya Raychaudhuri; Eleanora A Festen; Lude Franke; Harm-Jan Westra; Rudolf S N Fehrmann; Fina A S Kurreeman; Brian Thomson; Namrata Gupta; Jihane Romanos; Ross McManus; Anthony W Ryan; Graham Turner; Elisabeth Brouwer; Marcel D Posthumus; Elaine F Remmers; Francesca Tucci; Rene Toes; Elvira Grandone; Maria Cristina Mazzilli; Anna Rybak; Bozena Cukrowska; Marieke J H Coenen; Timothy R D J Radstake; Piet L C M van Riel; Yonghong Li; Paul I W de Bakker; Peter K Gregersen; Jane Worthington; Katherine A Siminovitch; Lars Klareskog; Tom W J Huizinga; Cisca Wijmenga; Robert M Plenge
Journal:  PLoS Genet       Date:  2011-02-24       Impact factor: 5.917

8.  Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.

Authors:  Yukinori Okada; Tomomitsu Hirota; Yoichiro Kamatani; Atsushi Takahashi; Hiroko Ohmiya; Natsuhiko Kumasaka; Koichiro Higasa; Yumi Yamaguchi-Kabata; Naoya Hosono; Michael A Nalls; Ming Huei Chen; Frank J A van Rooij; Albert V Smith; Toshiko Tanaka; David J Couper; Neil A Zakai; Luigi Ferrucci; Dan L Longo; Dena G Hernandez; Jacqueline C M Witteman; Tamara B Harris; Christopher J O'Donnell; Santhi K Ganesh; Koichi Matsuda; Tatsuhiko Tsunoda; Toshihiro Tanaka; Michiaki Kubo; Yusuke Nakamura; Mayumi Tamari; Kazuhiko Yamamoto; Naoyuki Kamatani
Journal:  PLoS Genet       Date:  2011-06-30       Impact factor: 5.917

9.  A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.

Authors:  Yukinori Okada; Kenichi Shimane; Yuta Kochi; Tomoko Tahira; Akari Suzuki; Koichiro Higasa; Atsushi Takahashi; Tetsuya Horita; Tatsuya Atsumi; Tomonori Ishii; Akiko Okamoto; Keishi Fujio; Michito Hirakata; Hirofumi Amano; Yuya Kondo; Satoshi Ito; Kazuki Takada; Akio Mimori; Kazuyoshi Saito; Makoto Kamachi; Yasushi Kawaguchi; Katsunori Ikari; Osman Wael Mohammed; Koichi Matsuda; Chikashi Terao; Koichiro Ohmura; Keiko Myouzen; Naoya Hosono; Tatsuhiko Tsunoda; Norihiro Nishimoto; Tsuneyo Mimori; Fumihiko Matsuda; Yoshiya Tanaka; Takayuki Sumida; Hisashi Yamanaka; Yoshinari Takasaki; Takao Koike; Takahiko Horiuchi; Kenshi Hayashi; Michiaki Kubo; Naoyuki Kamatani; Ryo Yamada; Yusuke Nakamura; Kazuhiko Yamamoto
Journal:  PLoS Genet       Date:  2012-01-26       Impact factor: 5.917

10.  Rheumatoid arthritis susceptibility loci at chromosomes 10p15, 12q13 and 22q13.

Authors:  Anne Barton; Wendy Thomson; Xiayi Ke; Steve Eyre; Anne Hinks; John Bowes; Darren Plant; Laura J Gibbons; Anthony G Wilson; Deborah E Bax; Ann W Morgan; Paul Emery; Sophia Steer; Lynne Hocking; David M Reid; Paul Wordsworth; Pille Harrison; Jane Worthington
Journal:  Nat Genet       Date:  2008-09-14       Impact factor: 38.330

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  139 in total

Review 1.  Genetics of autoimmune diseases: perspectives from genome-wide association studies.

Authors:  Yuta Kochi
Journal:  Int Immunol       Date:  2016-02-08       Impact factor: 4.823

2.  Acetylation impacts Fli-1-driven regulation of granulocyte colony stimulating factor.

Authors:  Mara L Lennard Richard; Danielle Brandon; Ning Lou; Shuzo Sato; Tomika Caldwell; Tamara K Nowling; Gary Gilkeson; Xian K Zhang
Journal:  Eur J Immunol       Date:  2016-08-16       Impact factor: 5.532

Review 3.  Effect of mannose-binding lectin gene polymorphisms on the risk of rheumatoid arthritis: Evidence from a meta-analysis.

Authors:  Jinjian Xu; Gang Chen; Zhen Yan; Mochang Qiu; Wentao Tong; Xiaobin Zhang; Li Zhang; Yimin Zhu; Keqi Liu
Journal:  Int J Rheum Dis       Date:  2021-01-17       Impact factor: 2.454

Review 4.  Genetics of rheumatoid arthritis in Asia--present and future.

Authors:  Kazuhiko Yamamoto; Yukinori Okada; Akari Suzuki; Yuta Kochi
Journal:  Nat Rev Rheumatol       Date:  2015-02-10       Impact factor: 20.543

Review 5.  Current concepts in the molecular pathogenesis of thyroid-associated ophthalmopathy.

Authors:  Yao Wang; Terry J Smith
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-03-20       Impact factor: 4.799

Review 6.  Genetic architectures of seropositive and seronegative rheumatic diseases.

Authors:  Yohei Kirino; Elaine F Remmers
Journal:  Nat Rev Rheumatol       Date:  2015-04-28       Impact factor: 20.543

Review 7.  Revisited HLA and non-HLA genetics of Takayasu arteritis--where are we?

Authors:  Chikashi Terao
Journal:  J Hum Genet       Date:  2015-07-16       Impact factor: 3.172

8.  Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.

Authors:  Jingchun Chen; Anu Loukola; Nathan A Gillespie; Roseann Peterson; Peilin Jia; Brien Riley; Hermine Maes; Daniella M Dick; Kenneth S Kendler; M Imad Damaj; Michael F Miles; Zhongming Zhao; Ming D Li; Jacqueline M Vink; Camelia C Minica; Gonneke Willemsen; Dorret I Boomsma; Beenish Qaiser; Pamela A F Madden; Tellervo Korhonen; Pekka Jousilahti; Jenni Hällfors; Joel Gelernter; Henry R Kranzler; Richard Sherva; Lindsay Farrer; Brion Maher; Michael Vanyukov; Michelle Taylor; Jenifer J Ware; Marcus R Munafò; Sharon M Lutz; John E Hokanson; Fangyi Gu; Maria T Landi; Neil E Caporaso; Dana B Hancock; Nathan C Gaddis; Timothy B Baker; Laura J Bierut; Eric O Johnson; Meghan Chenoweth; Caryn Lerman; Rachel Tyndale; Jaakko Kaprio; Xiangning Chen
Journal:  Nicotine Tob Res       Date:  2020-05-26       Impact factor: 4.244

9.  A balance between B cell receptor and inhibitory receptor signaling controls plasma cell differentiation by maintaining optimal Ets1 levels.

Authors:  Anne B Satterthwaite; Wei Luo; Jessica Mayeux; Toni Gutierrez; Lisa Russell; Andrew Getahun; Jennifer Müller; Thomas Tedder; Jane Parnes; Robert Rickert; Lars Nitschke; John Cambier; Lee Ann Garrett-Sinha
Journal:  J Immunol       Date:  2014-06-13       Impact factor: 5.422

Review 10.  Pre-rheumatoid arthritis: predisposition and transition to clinical synovitis.

Authors:  William P Arend; Gary S Firestein
Journal:  Nat Rev Rheumatol       Date:  2012-08-21       Impact factor: 20.543

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