Literature DB >> 2847777

Triosephosphate isomerase: removal of a putatively electrophilic histidine residue results in a subtle change in catalytic mechanism.

E B Nickbarg1, R C Davenport, G A Petsko, J R Knowles.   

Abstract

An important active-site residue in the glycolytic enzyme triosephosphate isomerase is His-95, which appears to act as an electrophilic component in catalyzing the enolization of the substrates. With the techniques of site-directed mutagenesis, His-95 has been replaced by Gln in the isomerase from Saccharomyces cerevisiae. The mutant isomerase has been expressed in Escherichia coli strain DF502 and purified to homogeneity. The specific catalytic activity of the mutant enzyme is less than that of wild type by a factor of nearly 400. The mutant enzyme can be resolved from the wild-type isomerase on nondenaturing isoelectric focusing gels, and an isomerase activity stain shows that the observed catalytic activity indeed derives from the mutant protein. The inhibition constants for arsenate and for glycerol phosphate with the mutant enzyme are similar to those with the wild-type isomerase, but the substrate analogues 2-phosphoglycolate and phosphoglycolohydroxamate bind 8- and 35-fold, respectively, more weakly to the mutant isomerase. The mutant enzyme shows the same stereospecificity of proton transfer as the wild type. Tritium exchange experiments similar to those used to define the free energy profile for the wild-type yeast isomerase, together with a new method of analysis involving 14C and 3H doubly labeled substrates, have been used to investigate the energetics of the mutant enzyme catalyzed reaction. When the enzymatic reaction is conducted in tritiated solvent, the mutant isomerase does not catalyze any appreciable exchange between protons of the remaining substrate and those of the solvent either in the forward reaction direction (using dihydroxyacetone phosphate as substrate) or in the reverse direction (using glyceraldehyde phosphate as substrate). However, the specific radioactivity of the product glyceraldehyde phosphate formed in the forward reaction is 31% that of the solvent, while that of the product dihydroxyacetone phosphate formed in the reverse reaction is 24% that of the solvent. The deuterium kinetic isotope effects observed with the mutant isomerase using [1(R)-2H]dihydroxyacetone phosphate and [2-2H]glyceraldehyde 3-phosphate are 2.15 +/- 0.04 and 2.4 +/- 0.1, respectively. These results lead to the conclusion that substitution of Gln for His-95 so impairs the ability of the enzyme to stabilize the reaction intermediate that there is a change in the pathways of proton transfer mediated by the mutant enzyme. The data allow us more closely to define the role of His-95 in the reaction catalyzed by the wild-type enzyme, while forcing us to be alert to subtle changes in mechanistic pathways when mutant enzymes are generated.

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Year:  1988        PMID: 2847777     DOI: 10.1021/bi00416a019

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

1.  High resolution crystal structures of triosephosphate isomerase complexed with its suicide inhibitors: the conformational flexibility of the catalytic glutamate in its closed, liganded active site.

Authors:  Rajaram Venkatesan; Markus Alahuhta; Petri M Pihko; Rik K Wierenga
Journal:  Protein Sci       Date:  2011-07-07       Impact factor: 6.725

2.  A paradigm for enzyme-catalyzed proton transfer at carbon: triosephosphate isomerase.

Authors:  John P Richard
Journal:  Biochemistry       Date:  2012-03-20       Impact factor: 3.162

3.  Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2-A resolution.

Authors:  Gerwald Jogl; Sharon Rozovsky; Ann E McDermott; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-30       Impact factor: 11.205

4.  Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

Authors:  Maybelle K Go; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2009-06-23       Impact factor: 3.162

5.  A solvent-isotope-effect study of proton transfer during catalysis by Escherichia coli (lacZ) beta-galactosidase.

Authors:  T Selwood; M L Sinnott
Journal:  Biochem J       Date:  1990-06-01       Impact factor: 3.857

6.  The mechanism of sugar phosphate isomerization by glucosamine 6-phosphate synthase.

Authors:  A Teplyakov; G Obmolova; M A Badet-Denisot; B Badet
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

7.  Active site properties of monomeric triosephosphate isomerase (monoTIM) as deduced from mutational and structural studies.

Authors:  W Schliebs; N Thanki; R Eritja; R Wierenga
Journal:  Protein Sci       Date:  1996-02       Impact factor: 6.725

8.  Structural mutations that probe the interactions between the catalytic and dianion activation sites of triosephosphate isomerase.

Authors:  Xiang Zhai; Tina L Amyes; Rik K Wierenga; J Patrick Loria; John P Richard
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

9.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

10.  Triosephosphate isomerase: 15N and 13C chemical shift assignments and conformational change upon ligand binding by magic-angle spinning solid-state NMR spectroscopy.

Authors:  Yimin Xu; Justin Lorieau; Ann E McDermott
Journal:  J Mol Biol       Date:  2009-10-23       Impact factor: 5.469

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