Literature DB >> 2114090

A solvent-isotope-effect study of proton transfer during catalysis by Escherichia coli (lacZ) beta-galactosidase.

T Selwood1, M L Sinnott.   

Abstract

1. Michaelis-Menten parameters for the hydrolysis of 4-nitrophenyl beta-D-galactopyranoside and 3,4-dinitrophenyl beta-D-galactopyranoside Escherichia coli (lacZ) beta-galactosidase were measured as a function of pH or pD (pL) in both 1H2O and 2H2O. 2. For hydrolysis of 4-nitrophenyl beta-D-galactopyranoside by Mg2(+)-free enzyme, V is pL-independent below pL 9, but the V/Km-pL profile is sigmoid, the pK values shifting from 7.6 +/- 0.1 in 1H2O to 8.2 +/- 0.1 in 2H2O, and solvent kinetic isotope effects are negligible, in accord with the proposal [Sinnott, Withers & Viratelle (1978) Biochem. J. 175, 539-546] that glycone-aglycone fission without acid catalysis governs both V and V/Km. 3. V for hydrolysis of 4-nitrophenyl beta-D-galactopyranoside by Mg2(+)-enzyme varies sigmoidally with pL, the pK value shifting from 9.19 +/- 0.09 to 9.70 +/- 0.07; V/Km shows both a low-pL fall, probably due to competition between Mg2+ and protons [Tenu, Viratelle, Garnier & Yon (1971) Eur. J. Biochem. 20, 363-370], and a high-pL fall, governed by a pK that shifts from 8.33 +/- 0.08 to 8.83 +/- 0.08. There is a negligible solvent kinetic isotope effect on V/Km, but one of 1.7 on V, which a linear proton inventory shows to arise from one transferred proton. 4. The variation of V and V/Km with pL is sigmoid for hydrolysis of 3,4-dinitrophenyl beta-D-galactopyranoside by Mg2(+)-enzyme, with pK values showing small shifts, from 8.78 +/- 0.09 to 8.65 +/- 0.08 and from 8.7 +/- 0.1 to 8.9 +/- 0.1 respectively. There is no solvent isotope effect on V or V/Km for 3,4-dinitrophenyl beta-D-galactopyranoside, despite hydrolysis of the galactosyl-enzyme intermediate governing V. 5. Identification of the 'conformation change' in the hydrolysis of aryl galactosides proposed by Sinnott & Souchard [(1973) Biochem. J. 133, 89-98] with the protolysis of the magnesium phenoxide arising from the action of enzyme-bound Mg2+ as an electrophilic catalyst rationalizes these data and also resolves the conflict between the proposals and the 18O kinetic-isotope-effect data reported by Rosenberg & Kirsch [(1981) Biochemistry 20, 3189-3196]. It should be noted that the actual Km values were determined to higher precision than can be estimated from the Figures in this paper.(ABSTRACT TRUNCATED AT 400 WORDS)

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Year:  1990        PMID: 2114090      PMCID: PMC1131434          DOI: 10.1042/bj2680317

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  21 in total

1.  An investigation of the contribution made by the carboxylate group of an active site histidine-aspartate couple to binding and catalysis in lactate dehydrogenase.

Authors:  A R Clarke; H M Wilks; D A Barstow; T Atkinson; W N Chia; J J Holbrook
Journal:  Biochemistry       Date:  1988-03-08       Impact factor: 3.162

Review 2.  The proton inventory technique.

Authors:  K S Venkatasubban; R L Schowen
Journal:  CRC Crit Rev Biochem       Date:  1984

3.  Comparison of the beta-galactosidase conformations induced by D-galactal and by magnesium ions.

Authors:  O M Viratelle; J M Yon
Journal:  Biochemistry       Date:  1980-09-02       Impact factor: 3.162

4.  Statistical analysis of enzyme kinetic data.

Authors:  W W Cleland
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

Review 5.  Mechanism and stereoelectronic effects in the lysozyme reaction.

Authors:  A J Kirby
Journal:  CRC Crit Rev Biochem       Date:  1987

6.  Affinity labelling with a deaminatively generated carbonium ion. Kinetics and stoicheiometry of the alkylation of methionine-500 of the lacZ beta-galactosidase of Escherichia coli by beta-D-galactopyranosylmethyl-p-nitrophenyltriazene.

Authors:  M L Sinnott; P J Smith
Journal:  Biochem J       Date:  1978-11-01       Impact factor: 3.857

7.  The necessity of magnesium cation for acid assistance aglycone departure in catalysis by Escherichia coli (lacZ) beta-galactosidase.

Authors:  M L Sinnott; S G Withers
Journal:  Biochem J       Date:  1978-11-01       Impact factor: 3.857

8.  Identification of an essential carboxylate group at the active site of lacZ beta-galactosidase from Escherichia coli.

Authors:  M Herrchen; G Legler
Journal:  Eur J Biochem       Date:  1984-02-01

9.  Functional role of aspartic acid-27 in dihydrofolate reductase revealed by mutagenesis.

Authors:  E E Howell; J E Villafranca; M S Warren; S J Oatley; J Kraut
Journal:  Science       Date:  1986-03-07       Impact factor: 47.728

10.  Oxygen-18 leaving group kinetic isotope effects on the hydrolysis of nitrophenyl glycosides. 1. beta-galactosidease-catalyzed hydrolysis.

Authors:  S Rosenberg; J F Kirsch
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

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  8 in total

1.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

2.  Larger increases in sensitivity to paracatalytic inactivation than in catalytic competence during experimental evolution of the second beta-galactosidase of Escherichia coli.

Authors:  S V Calugaru; S Krishnan; C J Chany; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1997-07-01       Impact factor: 3.857

Review 3.  LacZ β-galactosidase: structure and function of an enzyme of historical and molecular biological importance.

Authors:  Douglas H Juers; Brian W Matthews; Reuben E Huber
Journal:  Protein Sci       Date:  2012-11-13       Impact factor: 6.725

4.  Studies of Glu-416 variants of beta-galactosidase (E. coli) show that the active site Mg(2+) is not important for structure and indicate that the main role of Mg (2+) is to mediate optimization of active site chemistry.

Authors:  Summie Lo; Megan L Dugdale; Nisha Jeerh; Tabitha Ku; Nathan J Roth; Reuben E Huber
Journal:  Protein J       Date:  2010-01       Impact factor: 2.371

5.  Large changes of transition-state structure during experimental evolution of an enzyme.

Authors:  K Srinivasan; A Konstantinidis; M L Sinnott; B G Hall
Journal:  Biochem J       Date:  1993-04-01       Impact factor: 3.857

6.  Catalytic consequences of experimental evolution: catalysis by a 'third-generation' evolvant of the second beta-galactosidase of Escherichia coli, ebgabcde, and by ebgabcd, a 'second-generation' evolvant containing two supposedly 'kinetically silent' mutations.

Authors:  S Krishnan; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1995-12-15       Impact factor: 3.857

7.  Catalysis by the large subunit of the second beta-galactosidase of Escherichia coli in the absence of the small subunit.

Authors:  S V Calugaru; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1995-11-15       Impact factor: 3.857

8.  Divergence of catalytic mechanism within a glycosidase family provides insight into evolution of carbohydrate metabolism by human gut flora.

Authors:  Tracey M Gloster; Johan P Turkenburg; Jennifer R Potts; Bernard Henrissat; Gideon J Davies
Journal:  Chem Biol       Date:  2008-10-09
  8 in total

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