Literature DB >> 28471643

Lipostar, a Comprehensive Platform-Neutral Cheminformatics Tool for Lipidomics.

Laura Goracci1, Sara Tortorella1, Paolo Tiberi2, Roberto Maria Pellegrino1, Alessandra Di Veroli1, Aurora Valeri1, Gabriele Cruciani1.   

Abstract

To date, the main limitations for LC-MS-based untargeted lipidomics reside in the lack of adequate computational and cheminformatics tools that are able to support the analysis of several thousands of species from biological samples, enabling data mining and automating lipid identification and external prediction processes. To address these issues, we developed Lipostar, novel vendor-neutral high-throughput software that effectively supports both targeted and untargeted LC-MS lipidomics, implementing data acquisition, user-friendly multivariate analysis (to be used for model generation and new sample predictions), and advanced lipid identification protocols that can work with or without the support of preformed lipid databases. Moreover, Lipostar integrates the lipidomic processes with a full metabolite identification (MetID) procedure, essential in drug safety applications and in translational studies. Case studies demonstrating a number of Lipostar features are also presented.

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Year:  2017        PMID: 28471643     DOI: 10.1021/acs.analchem.7b01259

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  18 in total

Review 1.  Redox (phospho)lipidomics of signaling in inflammation and programmed cell death.

Authors:  Yulia Y Tyurina; Claudette M St Croix; Simon C Watkins; Alan M Watson; Michael W Epperly; Tamil S Anthonymuthu; Elena R Kisin; Irina I Vlasova; Olga Krysko; Dmitri V Krysko; Alexandr A Kapralov; Haider H Dar; Vladimir A Tyurin; Andrew A Amoscato; Elena N Popova; Sergey B Bolevich; Peter S Timashev; John A Kellum; Sally E Wenzel; Rama K Mallampalli; Joel S Greenberger; Hulya Bayir; Anna A Shvedova; Valerian E Kagan
Journal:  J Leukoc Biol       Date:  2019-05-09       Impact factor: 4.962

2.  Imidazole Ketone Erastin Induces Ferroptosis and Slows Tumor Growth in a Mouse Lymphoma Model.

Authors:  Yan Zhang; Hui Tan; Jacob D Daniels; Fereshteh Zandkarimi; Hengrui Liu; Lewis M Brown; Koji Uchida; Owen A O'Connor; Brent R Stockwell
Journal:  Cell Chem Biol       Date:  2019-02-21       Impact factor: 8.116

3.  Analytical Methodologies for Lipidomics in Hemp Plant.

Authors:  Andrea Cerrato; Anna Laura Capriotti; Carmela Maria Montone; Sara Elsa Aita; Giuseppe Cannazza; Cinzia Citti; Susy Piovesana; Laganà Aldo
Journal:  Methods Mol Biol       Date:  2021

4.  The Forty-Sixth Euro Congress on Drug Synthesis and Analysis: Snapshot .

Authors:  Pavel Mucaji; Atanas G Atanasov; Andrzej Bak; Violetta Kozik; Karolina Sieron; Mark Olsen; Weidong Pan; Yazhou Liu; Shengchao Hu; Junjie Lan; Norbert Haider; Robert Musiol; Jan Vanco; Marc Diederich; Seungwon Ji; Jan Zitko; Dongdong Wang; Danica Agbaba; Katarina Nikolic; Slavica Oljacic; Jelica Vucicevic; Daniela Jezova; Anna Tsantili-Kakoulidou; Fotios Tsopelas; Constantinos Giaginis; Teresa Kowalska; Mieczyslaw Sajewicz; Jerzy Silberring; Przemyslaw Mielczarek; Marek Smoluch; Izabela Jendrzejewska; Jaroslaw Polanski; Josef Jampilek
Journal:  Molecules       Date:  2017-10-28       Impact factor: 4.411

5.  Nutritional and lipidomics biomarkers of docosahexaenoic acid-based multivitamin therapy in pediatric NASH.

Authors:  Pierangelo Torquato; Danilo Giusepponi; Anna Alisi; Roberta Galarini; Desirée Bartolini; Marta Piroddi; Laura Goracci; Alessandra Di Veroli; Gabriele Cruciani; Annalisa Crudele; Valerio Nobili; Francesco Galli
Journal:  Sci Rep       Date:  2019-02-14       Impact factor: 4.379

6.  Insight into the mechanism of ferroptosis inhibition by ferrostatin-1.

Authors:  Giovanni Miotto; Monica Rossetto; Maria Luisa Di Paolo; Laura Orian; Rina Venerando; Antonella Roveri; Ana-Marija Vučković; Valentina Bosello Travain; Mattia Zaccarin; Lucio Zennaro; Matilde Maiorino; Stefano Toppo; Fulvio Ursini; Giorgio Cozza
Journal:  Redox Biol       Date:  2019-09-20       Impact factor: 11.799

7.  Sphingomyelins Prevent Propagation of Lipid Peroxidation-LC-MS/MS Evaluation of Inhibition Mechanisms.

Authors:  Giulia Coliva; Mike Lange; Simone Colombo; Jean-Pierre Chervet; M Rosario Domingues; Maria Fedorova
Journal:  Molecules       Date:  2020-04-21       Impact factor: 4.411

8.  Volumetric Absorptive Microsampling of Blood for Untargeted Lipidomics.

Authors:  Camilla Marasca; Maria Encarnacion Blanco Arana; Michele Protti; Andrea Cavalli; Laura Mercolini; Andrea Armirotti
Journal:  Molecules       Date:  2021-01-07       Impact factor: 4.411

Review 9.  Lipidomics unveils the complexity of the lipidome in metabolic diseases.

Authors:  Todd A Lydic; Young-Hwa Goo
Journal:  Clin Transl Med       Date:  2018-01-26

10.  Role of mitochondria and cardiolipins in growth inhibition of breast cancer cells by retinoic acid.

Authors:  Mineko Terao; Laura Goracci; Valentina Celestini; Mami Kurosaki; Marco Bolis; Alessandra Di Veroli; Arianna Vallerga; Maddalena Fratelli; Monica Lupi; Alessandro Corbelli; Fabio Fiordaliso; Maurizio Gianni; Gabriela Paroni; Adriana Zanetti; Gabriele Cruciani; Enrico Garattini
Journal:  J Exp Clin Cancer Res       Date:  2019-10-29
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