| Literature DB >> 28467794 |
Ming Li1, Ying Wang2,3, Liang Cheng4, Wanting Niu5, Guoan Zhao6, Jithin K Raju7, Jun Huo1, Bin Wu1, Bo Yin1, Yongsheng Song1, Renge Bu1.
Abstract
Renal cell carcinoma is one of the most common malignancy in adults, its prognosis is poor in an advanced stage and early detection is difficult due to the lack of molecular biomarkers. The identification of novel biomarkers for RCC is an urgent and meaningful project. Long non-coding RNA (lncRNA) is transcribed from genomic regions with a minimum length of 200 bases and limited protein-coding potential. Recently, lncRNAs have been greatly studied in a variety of cancer types. They participate in a wide variety of biological processes including cancer biology. In this review, we provide a new insight of the profiling of lncRNAs in RCC and their roles in renal carcinogenesis, with an emphasize on their potential in diagnosis, prognosis and potential roles in RCC therapy.Entities:
Keywords: diagnosis; lncRNA; prognosis; renal cell carcinoma; therapy
Mesh:
Substances:
Year: 2017 PMID: 28467794 PMCID: PMC5564659 DOI: 10.18632/oncotarget.17053
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1The functions and mechanisms of long non-coding RNAs
Accumulated evidence show that lncRNAs play important roles in a wide variety of biological processes, mainly in three aspects: 1. In the regulation of gene transcription, such as regulation of basal transcription machinery, gene-specific transcription and transcribed by RNA polymerase III; 2. In post-transcriptional regulation, such as splicing, translation, and siRNA-directed gene regulation; 3. In epigenetic regulation, such as imprinting, telomeric non-coding RNAs and Xist and X-chromosome inactivation.
Figure 2The functions of lncRNAs in pathogenesis and potential clinical applications in RCC
LncRNAs play multiple functions in the context of RCC, including regulating cell proliferation, cell cycle, apoptosis, invasion, migration, and metastasis in the forms of oncogenes or tumor suppressor genes. Some lncRNAs maybe serve as therapeutic targets and have the potential of the clinical application. Red arrows indicate promoted signaling pathways. Green arrows indicate inhibited signaling pathways. LncRNAs in black font indicate oncogenes. LncRNAs in white font indicate tumor suppressor genes. Some lncRNAs have multiple functions (for example, MALAT1 promotes cell proliferation, invasion, migration, and metastasis). Abbreviations: SPRY4-IT1: SPRY4 intronic transcript 1; HOTAIR: Hox transcript antisense intergenic RNA; UCA1: urothelial carcinoma-associated 1; lncRNA-ATB: lncRNA activated by TGF-β; MALAT1: metastasis-associated lung adenocarcinoma transcript 1; Linc00152: long intergenic noncoding RNA 152; TUG1: Taurine up-regulated gene 1; HEIRCC: high-expressed in renal cell carcinoma, lncRNA TCONS_00006756; CRNDE: colorectal neoplasia differentially expressed; CADM1-AS1: lncRNA cell adhesion molecule 1 antisense, lncRNA (RNA176206/ENST00000546273) located in the antisense direction of a coding exon of the cell adhesion molecule1 (CADM1); TRIM52-AS1: TRIM52 antisense RNA 1; GAS-5: growth arrest specific 5; MEG3: maternally expressed gene 3; TCL6: T-cell leukemia/lymphoma 6; CASC2: cancer susceptibility candidate 2; NBAT-1: neuroblastoma associated transcript 1; SRLR: sorafenib resistance-associated lncRNA in RCC; ARSR: lncRNA activated in RCC with sunitinib resistance, ENST00000424980.
The studies about expression profiling of lncRNAs in RCC
| Author | Year | Country | RCC subtype | Samplesize (n) | Differentiallyexpressed lncRNAs | Numberupregulated | Numberdownregulated | References |
|---|---|---|---|---|---|---|---|---|
| Yu et al | 2012 | China | ccRCC | 6 | 726 | 146 | 480 | |
| Liu et al | 2016 | China | not mentioned | 90 | 3862 | 1649 | 2243 | |
| Deng, Blondeau et al | 2015 | Germany | ccRCC | 15 | 1308 | 568 | 740 | |
| Qin et al | 2014 | China | ccRCC | 5 | 897 | 480 | 417 | |
| Fachel et al | 2013 | Brazil | ccRCC | 11 | 40 | 14 | 26 | |
| He et al | 2016 | China | chRCC | 59 | 143 | 41 | 102 |
Upregulated lncRNAs in RCC
| lncRNAs | Specimens | Functions | Target genes/Signalings | Pathways/Mechanisms involved | Referances |
|---|---|---|---|---|---|
| SPRY4-IT1 | RCC tissues, cell lines | oncogene | proliferation, migration, invasion | ||
| HOTAIR | cell lines | oncogene | H3K27me, EZH2, miR-141, Ago2 | proliferation, invasion, cell cycle | |
| UCA1 | RCC tissues, cell lines | oncogene | proliferation, migration, apoptosis | ||
| lncRNA-ATB | RCC tissues, cell lines | oncogene | EMT | proliferation, apoptosis, migration, invasion | |
| RCCRT1 | RCC tissues | biomarker | migration, invasion | ||
| MALAT1 | RCC tissues, cell lines | oncogene | Ezh2, miR-205 | proliferation, migration, invasion | |
| Linc00152 | RCC tissues, cell lines | oncogene, biomarker | proliferation, invasion, apoptosis, cell cycle | ||
| TUG1 | RCC tissues, cell lines | oncogene | migration, invasion, proliferation, apoptosis | ||
| H19 | RCC tissues, cell lines | biomarker | proliferation, invasion, migration | ||
| HEIRCC | RCC tissues, cell lines | oncogene | EMT | proliferation, apoptosis, migration, invasion | |
| CRNDE | RCC tissues, cell lines | oncogene | Wnt/β-catenin signaling | proliferation, growth, cell cycle | |
| uc009yby.1 | RCC tissues | oncogene | proliferation | ||
| FTX | RCC tissues, cell lines | oncogene | proliferation, cell cycle, migration, invasion | ||
| PVT1 | RCC tissues | oncogene | MYC | promoter hypomethylation |
Downregulated lncRNAs in RCC
| lncRNAs | Specimens | Functions | Target genes/Signalings | Pathways/Mechanisms involved | Referances |
|---|---|---|---|---|---|
| CADM1-AS1 | RCC tissues | tumor suppressor | CADM1 | cell proliferation, apoptosis and migration | |
| TRIM52-AS1 | RCC tissues | tumor suppressor | proliferation, cell migration and apoptosis | ||
| GAS-5 | RCC tissues | tumor suppressor | proliferation, apoptosis, cell cycle, migration, invasion | ||
| MEG3 | RCC tissues, cell lines | tumor suppressor | Bcl-2, rocaspase-9, leaved caspase-9, cytochrome c | apoptosis, mitochondrial pathway | |
| BX357664 | RCC tissues, cell lines | tumor suppressor | EMT, MMP2, MMP9, TGF-β1/p38/HSP27 | proliferation, migration, invasion, cell cycle | |
| TCL6 | RCC tissues | tumor suppressor | proliferation, apoptosis | ||
| CASC2 | RCC tissues, cell lines | tumor suppressor | miR-21 | proliferation, migration | |
| NBAT-1 | RCC tissues, cell lines | prognostic biomarker | proliferation, migration, invasion |
Prognostic lncRNAs in RCC
| lncRNAs | Prognostic information | Referances |
|---|---|---|
| CADM1-AS1 | decreased expression, poor prognosis (OS) | |
| TCL6 | low expression, poor prognosis (OS) | |
| NONHSAT123350 | low expression, poor prognosis (DFS, OS) | |
| lnc-ZNF180-2 | low level, poor progression-free, CSS and OS | |
| SPRY4-IT1 | high expression, poor prognosis (OS) | |
| RCCRT1 | high expression, poor survival | |
| MALAT1 | high expression, poor prognosis (OS) | |
| Linc00152 | high expression, poor prognosis (OS) | |
| DRAIC | overexpression, good prognosis | |
| PVT1 | high expression, poor prognosis (OS) |
LncRNAs potentially serve as therapeutic targets for RCC
| LncRNAs | Location | Properties/Mechanisms | References |
|---|---|---|---|
| HOTAIR | chromosome 12 | recruit and bind on the locus of EZH2 and H3K27me3 | |
| inhibit cycle-related genes p53, p21 and p16 | |||
| modulate covalent histones | |||
| interact with methyltransferase PRC2, histone demethylase LSD1 | |||
| regulates gene silencing | |||
| required for H3K27 trimethylation | |||
| transcriptional silencing across the HOXD locus | |||
| RCCRT1 | chr5:137801181-137805004 | upregulated in RCC | |
| upregulated predicts poor survival of RCC | |||
| MALAT1 | chromosome 11q13 | independent predictor of OS in ccRCC | |
| sequester serine/arginine splicing factors in nuclear speckle domains | |||
| regulate alternative splicing | |||
| transcriptional activation of MALAT1 by c-Fos contribute to oncogenesis | |||
| interact with Ezh2 | |||
| reciprocally repressed with miR205 | |||
| regulate EMT via E-cadherin and β-catenin | |||
| promote ZEB2 expression by sponging miR-200s | |||
| H19 | 11p15.5 | exon 1 of H19 harbors a miRNA-containing hairpin | |
| serve as the template of two miR6755p and miR6753p | |||
| LncRNA-SRLR | 3q24 | upregulated in intrinsically sorafenib resistant RCC | |
| LncARSR | 9q82.120.717-82.185.824 | promote sunitinib resistance of RCC | |
| competitively bind to miR-34/miR-449 | |||
| facilitate AXL and c-MET expression | |||
| exosome-transferred lncARSR confer sunitinib resistance | |||
| targeting lncARSR restores sunitinib response in RCC | |||
| CADM1-AS1 | antisense direction of a coding exon ofthe cell adhesion molecule 1 (CADM1) | involved in renal carcinogenesisindependent prognostic factor for ccRCC |