| Literature DB >> 32698787 |
Yannick Luther Agbana1, Manzama-Esso Abi2, Yueli Ni1, Guohang Xiong1, Jing Chen1, Fang Yun1, Zihan Yi1, Qiao Zhang1, Zhe Yang3, Yingmin Kuang4, Yuechun Zhu5.
Abstract
BACKGROUND: Long intergenic non-coding RNA 00511 (LINC00511) is highly expressed in diverse cancers and has a correlation with poor clinical outcomes for cancer patients. In view of contradictory data among published data, we aim to evaluate the prognostic role of LINC00511 for cancer patients.Entities:
Keywords: Cancer; LINC00511; Meta-analysis; Prognostic biomarker; Survival; TCGA
Mesh:
Substances:
Year: 2020 PMID: 32698787 PMCID: PMC7376647 DOI: 10.1186/s12885-020-07188-3
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Fig. 1Flowchart of the literature search strategy
Characteristics of the studies included in the meta-analysis
| First author | Year | Country | Tumor type | Sample size | Gender | LINC00511 expression | Detection method | Tumor stage | Cut-off value | Survival analysis | Outcome | Quality score | Data extraction method |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sun C.-C. | 2016 | China | NSCLC | 124 | 58/66 | 93/31 | qRT-PCR | I-IV | P25 value | Univariate/Multivariate | OS/CP | 8 | Direct |
| Zhao X. | 2017 | China | PDAC | 140 | 78/62 | 102/38 | qRT-PCR | I-III | Not available | Univariate/Multivariate | OS/PFS/CP | 7 | Direct |
| Lu G. | 2018 | China | BC | 39 | 0/39 | 23/16 | qRT-PCR | I-IV | Mean | Kaplan-Meier | OS/CP | 7 | Indirect |
| Mao B.-D. | 2019 | China | CC | 84 | 0/84 | 49/35 | qRT-PCR | I1a-II2b | Median (0.996) | Kaplan-Meier | OS/RFS/CP | 7 | Indirect |
| Wang R.-P. | 2019 | China | HCC | 127 | 76/51 | 64/63 | qRT-PCR | I-IV | Median | Univariate/Multivariate | OS/CP | 8 | Direct |
| Zhang J. | 2019 | China | BC | 70 | 0/70 | 24/46 | qRT-PCR | I-IV | Mean | Kaplan-Meier | OS/CP | 8 | Indirect |
| Liu L. | 2019 | China | BC | 98 | 0/98 | 49/49 | qRT-PCR | I-IV | Median | Kaplan-Meier | OS/CP | 7 | Indirect |
| Yu C.-L. | 2019 | China | CC | 92 | 0/92 | 46/46 | qRT-PCR | I-IV | Not available | Univariate/Multivariate | OS/CP | 8 | Direct |
| Deng H. | 2019 | China | ccRCC | 49 | 21/28 | 25/24 | qRT-PCR | I-IV | Median | Kaplan-Meier | OS/CP | 6 | Indirect |
| Zhu F.-Y. | 2019 | China | NSCLC | 57 | 28/29 | 29/28 | qRT-PCR | I-IV | Median | Kaplan-Meier | OS/CP | 8 | Direct |
| Du X. | 2019 | China | GBM | 36 | 24/12 | 18/18 | qRT-PCR | Not available | Median | Kaplan-Meier | OS/PFS/CP | 7 | Indirect |
| Wang J. | 2019 | China | OC | 378 | Not available | 189/189 | qRT-PCR | Not available | Median | Univariate | OS | 7 | Direct |
| Wang Z. | 2019 | China | PC | 177 | Not available | 134/43 | RNA sequencing expression data | Not available | Not available | Kaplan-Meier | OS | 7 | Direct |
| Li C. | 2019 | China | GL | 412 | Not available | 206/206 | qRT-PCR | Not available | Not available | Kaplan-Meier | OS | 6 | Indirect |
Abbreviations: NSCLC Non-small-cell lung cancer, PDAC Pancreatic ductal adenocarcinoma, BC Breast cancer, CC Cervical cancer, HCC hepatocellular carcinoma, ccRCC Clear cell renal cell carcinoma, GBM Glioblastoma multiforme, OC Ovarian cancer, PC Pancreatic cancer, GL Glioma, qRT-PCR Quantitative real time polymerase chain, OS Overall survival, PFS Progression-free survival, RFS Relapse-free survival, DFS Disease-free survival, CP Clinicopathological parameters
Fig. 2Forest plots of combined analyses on the association of survival with LINC00511 expression. a Forest plot of OS analysis, b Forest plot of meta-analysis of the independent predictive value of LINC00511 for OS, and c forest plot of PFS analysis
Fig. 3Forest plots of the association between LINC00511 expression and overall survival in subgroups based on a cancer types; b sample size; c different cut-off value and d different extraction method
Meta-analyses of the correlation between LINC00511 expression and clinicopathological features
| Variables | Number of studies | Number of patients | Model | OR | Heterogeneity | ||
|---|---|---|---|---|---|---|---|
| 95% CI | I2 (%) | PH | |||||
| Gender (Male vs. Female) | 6 | 498 | Random | 0.98 (0.53–1.85) | 0.96 | 58 | 0.04 |
| Age | |||||||
| ≥45 vs. < 45 | 1 | 84 | – | 0.66 (0.28–1.59) | 0.36 | – | – |
| ≥50 vs. < 50 | 6 | 462 | Fixed | 0.69 (0.47–1.01) | 0.06 | 0 | 0.98 |
| ≥60 vs. < 60 | 1 | 140 | – | 0.72 (0.34–1.52) | 0.39 | – | – |
| ≥65 vs. < 65 | 2 | 173 | Fixed | 0.59 (0.29–1.20) | 0.15 | 0 | 0.89 |
| Histological grade (poor vs. well and moderate) | 8 | 725 | Fixed | 1.34 (0.97–1.85) | 0.07 | 0 | 0.75 |
| Histological tumor type (adenocarcinoma vs. squamous cell carcinoma) | 3 | 300 | Random | 2.80 (0.58–13.59) | 0.20 | 71 | 0.03 |
| Tumor size (large vs. small) | 11 | 916 | Random | 3.10 (1.97–4.86) | 50 | 0.03 | |
| Lymph node metastasis (positive vs. negative) | 10 | 880 | Fixed | 3.11 (2.30–4.21) | 42 | 0.08 | |
| Clinical stage (late vs. early) | 8 | 643 | Fixed | 3.95 (2.68–5.81) | 0 | 0.48 | |
| Distant metastasis (Yes vs. No) | 3 | 215 | Fixed | 2.39 (1.16–4.93) | 21 | 0.28 | |
| Recurrence (Yes vs. No) | 3 | 274 | Fixed | 4.62 (2.47–8.65) | 0 | 0.66 | |
Abbreviations: OR Odd ratio, PP-value of heterogeneity
Fig. 4Funnel plot of publication bias based on Overall survival (OS)
Fig. 5Sensitivity analysis of pooled HR for overall survival
Fig. 6Validation of the expression levels of LINC00511 in TCGA normal and GTEx datasets: “*” indicates log2FC value > 1 and p-value < 0.01. TCGA, The Cancer Genome Atlas; GTEx, Genotype-Tissue Expression; ACC, adrenocortical carcinoma; THYM, thymoma; LGG, brain lower grade glioma; GBM, glioblastoma multiforme; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; PAAD, pancreatic adenocarcinoma; BRCA, breast invasive carcinoma; CESC, cervical squamous cell carcinoma; LIHC, liver hepatocellular carcinoma; KIRC, Kidney renal clear cell carcinoma; KIRP, Kidney renal papillary cell carcinoma; KICH, Kidney Chromophobe; TPM, transcripts per million; T, tumor; N, normal
Fig. 7Kaplan–Meier plots depicting the prognostic potential of LINC00511 for cancer patients’ survival. a Overall survival plot. b Disease-free survival. c Overall survival plot for adrenocortical carcinoma (ACC). d Overall survival plot for thymoma (THYM)