| Literature DB >> 28467444 |
Xiao-Jing Jiang1, Jun Zhang2, Yong Xiong3, Gerhard Jahn4, Hai-Rong Xiong5, Zhan-Qiu Yang5, Yuan-Yuan Liu5.
Abstract
BACKGROUND: Multiple strains infection of human cytomegalovirus (HCMV) was found to be correlated with increased viral load in immunodeficient patients. However, the pathogenic mechanism underlying this correlation remains unclear. To evaluate genetic polymorphisms of HCMV glycoprotein and their potential role in its viral load, HCMV glycoprotein B, N, and O (gB, gN and gO) genotypes was studied in the population of HCMV infected acquired immune deficiency syndrome (AIDS) patients. The association between glycoprotein polymorphisms and HCMV viral load was analyzed.Entities:
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Year: 2017 PMID: 28467444 PMCID: PMC5415198 DOI: 10.1371/journal.pone.0176160
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of AIDS patients with and without detectable HCMV IE4 gene in serum samples.
| Characteristics | HCMV positive (n = 65) | HCMV negative (n = 41) |
|---|---|---|
| Gender | ||
| Male | 47 | 31 |
| Femal | 18 | 10 |
| Age (Mean±SD) | 40.0±12.3 | 36.5±12.0 |
| Current HIV treatment | ||
| Yes | 20 | 15 |
| No | 45 | 26 |
| Mean CD4+ counts, cells/ mm3 | 17.0 | 27.0 |
| Opportunistic infections | ||
| Toxoplasmosis | 1 | 1 |
| Tuberculosis | 16 | 49 |
| Cryptococcosis | 3 | 7 |
| Pneumocystosis | 4 | 1 |
| fungal infection | 31 | 15 |
| HCMV retinitis | 9 | 6 |
| HCMV encephalitis | 2 | 0 |
| HCMV colitis | 11 | 3 |
Primers used for multiplex nested PCR, real-time PCR and gN sequencing.
| Gee | Method | Primer | Primer sequence (5’ to 3’) | GenBank accession | Position | Product length |
|---|---|---|---|---|---|---|
| gB | Primary PCR | UL55 up | KP745727.1 | 83930 to 83947 | 751 | |
| UL55 low | KP745727.1 | 83196 to 83218 | ||||
| Nested PCR | gB1 | KF297339.1 | 84086 to 84105 | 420 | ||
| gB2 | 83509 to 83531 | 613 | ||||
| gB3 | 83097 to 83115 | 190 | ||||
| gB4 | GU179291.1 | 83557 to 83579 | 465 | |||
| gB5 | AF062421.1 | 78 to 96 | 139 | |||
| gB low | KP745727.1 | 83284 to 83302 | ||||
| gN | Primary PCR | UL73 up | KP745723.1 | 106325 to 106344 | 469 | |
| UL73 low | KP745723.1 | 106767 to 106787 | ||||
| Nested PCR | gN 1 | FJ527563.1 | 106796 to 106817 | 283 | ||
| gN 2 | GU179291.1 | 106907 to 106925 | 380 | |||
| gN 3b | 106738 to 106756 | 214 | ||||
| gN 4a | 107107 to 107132 | 325 | ||||
| gN 4b/c | FJ616285.1 | 106421 to 106446 | 244 | |||
| gN low | KP745723.1 | 106732 to 106750 | ||||
| gO | Primary PCR | UL74 up | KP745727.1 | 107053 to 107071 | 1901 | |
| UL74 low | KP745727.1 | 108930 to 108954 | ||||
| Nested PCR | gOup-1 | KP745727.1 | 108144 to 108164 | |||
| gO1a-2 | 108349 to 108368 | 582 | ||||
| gO 2a | EU348354.1 | 244 to 267 | 441 | |||
| gO 3 | 393 to 412 | 304 | ||||
| gO 4 | 107859 to 107878 | 520 | ||||
| gO 5 | 108468 to 108489 | 352 | ||||
| Nested PCR | gO up-2: | KP745727.1 | 108144 to 108162 | |||
| gO 1a-1 | 108348 to 108367 | 581 | ||||
| gO 1b | AF531354.1 | 86 to 106 | 608 | |||
| gO 1c | KF297339.1 | 108979 to 109002 | 462 | |||
| gO 2b | GU179288.1 | 108357 to 108380 | 308 | |||
| IE | real-time PCR | P1 | 172849 to 172868 | 76 | ||
| P2 | 172898 to 172918 | |||||
| gN | sequencing | gN up | KP745722.1 | 106845 to 106861 | 417 | |
| gN low | 107243 to 107262 |
* The multiplex nested PCR assay was performed for genotyping. The first PCR round was designed to amplify the segment containing the major variable region of target gene. The primers for primary PCR were designed on the conserved regions. The nested PCR round was carry out with a set of genotype-specific primers. For gB/gN genotyping, the multiplex nested PCR was performed using a set of genotype-specificprimers (gB1, gB2, gB3, gB4, gB5/ gN1, gN2, gN3b, gN4a, gN4b/c) and a single common primer (gB low/ gN low), respectively. For detection of gO genotypes, the multiplex nested PCR was divided into 2 groups. The gO up-1 was used as the common primer and a set of genotype-specific primers (gO1a-2, gO2a, gO3, gO4, gO5) was used to distinguish five gO genotypes in group1. In group2, the gO up-2 was used as the common primer and gO1a-1, gO1b, gO1c, gO2b were used as the genotype-specificprimers.
Fig 1Multiplex nested PCR analysis for identification of HCMV gB, gN, gO genotypes (AD 169 is HCMV laboratory strain).
A) Multiplex nested PCR analysis for HCMV gB genotyping. Size: gB1, 420bp; gB2, 613bp; gB3, 190bp; gB4, 465bp; gB5, 139bp. AD-169 (gB2); Sample (gB1+ gB3+gB4). B) Multiplex nested PCR analysis for HCMV gN genotyping. Size: gN1, 283bp; gN2, 380bp; gN3 214bp; gN4a, 325bp, gN4b/c, 244bp. AD-169 (gN1); Sample (gN1+gN2+gN3b). C-1) Multiplex nested PCR analysis for HCMV gO genotyping (Group1). Size: gO1a, 582bp; gO2a, 441bp; gO3 304bp; gO4, 520bp; gO5, 352bp. AD-169 (gO1a); Sample (gO3). C-2) Multiplex nested PCR analysis for HCMV gO genotyping (Group2) Size: gO group2: gO1a, 581bp; gO1b, 608bp; gO1c, 462bp; gO2b, 308bp. AD-169 (gO1a); Sample (gO1a+gO1c).
Fig 2Comparison of HCMV viral load as measured by real-time quantitative PCR in blood samples and distribution of glycoprotein genotypes gO and gN genotypes in AIDS patients.
A) The difference between the viral load within groups presence and absence of gO1a was not statistically significant (P = 0.062); B) The difference between the viral load within groups with and without gN4a was statistically significant (P = 0.048); C) The difference between the viral load within groups presence and absence of gO1a and gN4a was statistically significant (P = 0.020).
HCMV viral load in patients with presence and absence of gO1a and gN4a genotype infection.
| gO1a(n) | gN4a(n) | |||||
|---|---|---|---|---|---|---|
| Presence (24) | Absence (26) | Presence (27) | Absence (23) | |||
| Viral load (log10 copies/ml) | 2.4(1.8–3.0) | 1.9(1.3–2.6) | 0.062 | 2.4(1.7–3.0) | 1.9(1.2–2.5) | 0.048 |
Values are given as median (interquartile range).
Association of gO and gN genotypes in multiple HCMV infection.
| gO | |||||||||
| gN | 1a(n = 26) | 1b(n = 1) | 1c(n = 5) | 2a(n = 4) | 2b(n = 8) | 3(n = 13) | 4(n = 2) | 5(n = 4) | |
| 1(n = 11) | 0(0) | 1(3.0) | 1(3.0) | 3(9.1) | 4(12.1) | 1(3.0) | 0(0) | ||
| 2(n = 17) | 13(39.4) | 1(3.0) | 4(12.1) | 1(3.0) | 8(24.2) | 0(0) | 3(9.1) | ||
| 3a(n = 2) | 1(3.0) | 1(3.0) | 1(3.0) | 0(0) | 1(3.0) | 0(0) | 1(3.0) | ||
| 3b(n = 6) | 3(9.1) | 0(0) | 0(0) | 2(6.1) | 3(9.1) | 0(0) | 0(0) | ||
| 4a(n = 21) | 1(3.0) | 3(9.1) | 3(9.1) | 4(12.1) | 2(6.1) | 4(12.1) | |||
| 4b(n = 4) | 4(12.1) | 0(0) | 0(0) | 1(3.0) | 2(6.1) | 0(0) | 0(0) | ||
| 4c(n = 2) | 1(3.0) | 0(0) | 0(0) | 0(0) | 1(3.0) | 0(0) | 0(0) | ||
Data are expressed as number (%) of patients.
Fig 3Distribution of different gO/gN linkages in AIDS patients with multiple HCMV genotypes infection.
Association between gO/gN genotype linkages and viral load.
| gO1a/gN4a(n) | gO1a/gN1(n) | gO3/gN4a(n) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Presence (16) | Absence | Presence (9) | Absence | Presence (9) | Absence | ||||
| Viral load (log10 copies/ml) | 2.7(1.9–3.1) | 2.0(1.3–2.6) | .020 | 2.4(0.7–2.9) | 2.2(1.5–2.7) | NS | 1.9(0.9–3.3) | 2.3(1.6–2.7) | NS |
* Values are given as median (interquartile range).
# Absence of all the corresponding gO and gN genotypes.
NS: none significance.