Literature DB >> 28461493

Single-stranded nucleic acid elasticity arises from internal electrostatic tension.

David R Jacobson1, Dustin B McIntosh1, Mark J Stevens2, Michael Rubinstein3, Omar A Saleh4.   

Abstract

Understanding of the conformational ensemble of flexible polyelectrolytes, such as single-stranded nucleic acids (ssNAs), is complicated by the interplay of chain backbone entropy and salt-dependent electrostatic repulsions. Molecular elasticity measurements are sensitive probes of the statistical conformation of polymers and have elucidated ssNA conformation at low force, where electrostatic repulsion leads to a strong excluded volume effect, and at high force, where details of the backbone structure become important. Here, we report measurements of ssDNA and ssRNA elasticity in the intermediate-force regime, corresponding to 5- to 100-pN forces and 50-85% extension. These data are explained by a modified wormlike chain model incorporating an internal electrostatic tension. Fits to the elastic data show that the internal tension decreases with salt, from [Formula: see text]5 pN under 5 mM ionic strength to near zero at 1 M. This decrease is quantitatively described by an analytical model of electrostatic screening that ascribes to the polymer an effective charge density that is independent of force and salt. Our results thus connect microscopic chain physics to elasticity and structure at intermediate scales and provide a framework for understanding flexible polyelectrolyte elasticity across a broad range of relative extensions.

Entities:  

Keywords:  electrostatics; flexible polyelectrolytes; force spectroscopy; single-stranded nucleic acids

Mesh:

Substances:

Year:  2017        PMID: 28461493      PMCID: PMC5441769          DOI: 10.1073/pnas.1701132114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

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Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

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Journal:  Nature       Date:  1997-01-09       Impact factor: 49.962

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Journal:  Biophys Chem       Date:  1977-09       Impact factor: 2.352

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Journal:  Phys Rev Lett       Date:  2012-07-23       Impact factor: 9.161

8.  Chains are more flexible under tension.

Authors:  Andrey V Dobrynin; Jan-Michael Y Carrillo; Michael Rubinstein
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9.  Counting the ions surrounding nucleic acids.

Authors:  David R Jacobson; Omar A Saleh
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

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Review 7.  Thermostability, Tunability, and Tenacity of RNA as Rubbery Anionic Polymeric Materials in Nanotechnology and Nanomedicine-Specific Cancer Targeting with Undetectable Toxicity.

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8.  Depletion layer dynamics of polyelectrolyte solutions under Poiseuille flow.

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Review 9.  Lipid-Nucleic Acid Complexes: Physicochemical Aspects and Prospects for Cancer Treatment.

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  9 in total

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