Literature DB >> 15447383

Elastic properties of a single-stranded charged homopolymeric ribonucleotide.

Yeonee Seol1, Gary M Skinner, Koen Visscher.   

Abstract

We have investigated the elastic properties of poly(U), homopolymeric single-stranded RNA molecules that lack any base pairing and stacking interactions and conform to a random-coil structure. Using single-molecule stretching experiments we show that the elastic properties are described by a wormlike chain model for polymer elasticity rather than by a freely jointed chain model as is commonly used for single-stranded DNA. At low [Na+], introduction of a scale-dependent persistence length is required to account for electrostatic contributions.

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Year:  2004        PMID: 15447383     DOI: 10.1103/PhysRevLett.93.118102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  52 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  Ionic strength-dependent persistence lengths of single-stranded RNA and DNA.

Authors:  Huimin Chen; Steve P Meisburger; Suzette A Pabit; Julie L Sutton; Watt W Webb; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

3.  On the origin of the unusual behavior in the stretching of single-stranded DNA.

Authors:  Ngo Minh Toan; D Thirumalai
Journal:  J Chem Phys       Date:  2012-06-21       Impact factor: 3.488

4.  Entropic origin of Mg2+-facilitated RNA folding.

Authors:  Julie L Fiore; Erik D Holmstrom; David J Nesbitt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-01       Impact factor: 11.205

5.  Tuning RNA Flexibility with Helix Length and Junction Sequence.

Authors:  Julie L Sutton; Lois Pollack
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

6.  Direct observation of processive exoribonuclease motion using optical tweezers.

Authors:  Furqan M Fazal; Daniel J Koslover; Ben F Luisi; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

7.  Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods.

Authors:  Pan T X Li; Delphine Collin; Steven B Smith; Carlos Bustamante; Ignacio Tinoco
Journal:  Biophys J       Date:  2005-10-07       Impact factor: 4.033

Review 8.  Determination of thermodynamics and kinetics of RNA reactions by force.

Authors:  Ignacio Tinoco; Pan T X Li; Carlos Bustamante
Journal:  Q Rev Biophys       Date:  2006-10-16       Impact factor: 5.318

Review 9.  High-resolution, single-molecule measurements of biomolecular motion.

Authors:  William J Greenleaf; Michael T Woodside; Steven M Block
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

10.  Dynamic structure of retinylidene ligand of rhodopsin probed by molecular simulations.

Authors:  Pick-Wei Lau; Alan Grossfield; Scott E Feller; Michael C Pitman; Michael F Brown
Journal:  J Mol Biol       Date:  2007-06-26       Impact factor: 5.469

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