Literature DB >> 28447993

Synthesis of 1,2-Azaborines and the Preparation of Their Protein Complexes with T4 Lysozyme Mutants.

Hyelee Lee1, Shih-Yuan Liu2.   

Abstract

We describe a general synthesis of 1,2-azaborines using standard air-free techniques and protein complex preparation with T4 lysozyme mutants by vapor diffusion. Oxygen- and moisture-sensitive compounds are prepared and isolated under an inert atmosphere (N2) using either a vacuum gas manifold or a glove box. As an example of azaborine synthesis, we demonstrate the synthesis and purification of the volatile N-H-B-ethyl-1,2-azaborine by a five-step sequence involving distillation and column chromatography for the isolation of products. T4 lysozyme mutants L99A and L99A/M102Q are expressed with Escherichia coli RR1 strain. Standard protocols for chemical cell lysis followed by purification using carboxymethyl ion exchange column affords protein of sufficiently high purity for crystallization. Protein crystallization is performed in various concentrations of precipitant at different pH ranges using the hanging drop vapor diffusion method. Complex preparation with the small molecules is carried out by vapor diffusion method under an inert atmosphere. X-ray diffraction analysis of the crystal complex provides unambiguous structural evidence of binding interactions between the protein binding site and 1,2-azaborines.

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Year:  2017        PMID: 28447993      PMCID: PMC5564415          DOI: 10.3791/55154

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  19 in total

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Authors:  Binqing Q Wei; Walter A Baase; Larry H Weaver; Brian W Matthews; Brian K Shoichet
Journal:  J Mol Biol       Date:  2002-09-13       Impact factor: 5.469

2.  Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.

Authors:  Hyelee Lee; Marcus Fischer; Brian K Shoichet; Shih-Yuan Liu
Journal:  J Am Chem Soc       Date:  2016-09-12       Impact factor: 15.419

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4.  Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme.

Authors:  A Morton; W A Baase; B W Matthews
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

5.  BN/CC isosterism in borazaronaphthalenes towards phosphodiesterase 10A (PDE10A) inhibitors.

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Authors:  Xiao-Ye Wang; Jie-Yu Wang; Jian Pei
Journal:  Chemistry       Date:  2014-12-02       Impact factor: 5.236

7.  BN/CC isosteric compounds as enzyme inhibitors: N- and B-ethyl-1,2-azaborine inhibit ethylbenzene hydroxylation as nonconvertible substrate analogues.

Authors:  Daniel H Knack; Jonathan L Marshall; Gregory P Harlow; Agnieszka Dudzik; Maciej Szaleniec; Shih-Yuan Liu; Johann Heider
Journal:  Angew Chem Int Ed Engl       Date:  2013-01-28       Impact factor: 15.336

8.  Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.

Authors:  Lijun Liu; Walter A Baase; Brian W Matthews
Journal:  J Mol Biol       Date:  2008-11-06       Impact factor: 5.469

9.  Benzazaborinines as Novel Bioisosteric Replacements of Naphthalene: Propranolol as an Example.

Authors:  Frederik J R Rombouts; Fulgencio Tovar; Nigel Austin; Gary Tresadern; Andrés A Trabanco
Journal:  J Med Chem       Date:  2015-11-30       Impact factor: 7.446

10.  Elemental isomerism: a boron-nitrogen surrogate for a carbon-carbon double bond increases the chemical diversity of estrogen receptor ligands.

Authors:  Hai-Bing Zhou; Kendall W Nettles; John B Bruning; Younchang Kim; Andrzej Joachimiak; Sanjay Sharma; Kathryn E Carlson; Fabio Stossi; Benita S Katzenellenbogen; Geoffrey L Greene; John A Katzenellenbogen
Journal:  Chem Biol       Date:  2007-06
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