Literature DB >> 28445833

Phytochrome diversification in cyanobacteria and eukaryotic algae.

Nathan C Rockwell1, J Clark Lagarias2.   

Abstract

Phytochromes control almost every aspect of plant biology, including germination, growth, development, and flowering, in response to red and far-red light. These photoreceptors thus hold considerable promise for engineering crop plant responses to light. Recently, structural research has shed new light on how phytochromes work. Genomic and transcriptomic studies have improved our understanding of phytochrome loss, retention, and diversification during evolution. We are also beginning to understand phytochrome function in cyanobacteria and eukaryotic algae.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28445833      PMCID: PMC5483197          DOI: 10.1016/j.pbi.2017.04.003

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  50 in total

Review 1.  Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria.

Authors:  Masahiko Ikeuchi; Takami Ishizuka
Journal:  Photochem Photobiol Sci       Date:  2008-08-18       Impact factor: 3.982

2.  Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Ji-Young Song; Hye Sun Cho; Jung-Il Cho; Jong-Seong Jeon; J Clark Lagarias; Youn-Il Park
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

3.  Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes.

Authors:  Nathan C Rockwell; Shelley S Martin; Kateryna Feoktistova; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-28       Impact factor: 11.205

4.  Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants.

Authors:  Dana C Price; Cheong Xin Chan; Hwan Su Yoon; Eun Chan Yang; Huan Qiu; Andreas P M Weber; Rainer Schwacke; Jeferson Gross; Nicolas A Blouin; Chris Lane; Adrián Reyes-Prieto; Dion G Durnford; Jonathan A D Neilson; B Franz Lang; Gertraud Burger; Jürgen M Steiner; Wolfgang Löffelhardt; Jonathan E Meuser; Matthew C Posewitz; Steven Ball; Maria Cecilia Arias; Bernard Henrissat; Pedro M Coutinho; Stefan A Rensing; Aikaterini Symeonidi; Harshavardhan Doddapaneni; Beverley R Green; Veeran D Rajah; Jeffrey Boore; Debashish Bhattacharya
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

Review 5.  A brief history of phytochromes.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Chemphyschem       Date:  2010-04-26       Impact factor: 3.102

Review 6.  Photoreceptor signaling networks in plant responses to shade.

Authors:  Jorge J Casal
Journal:  Annu Rev Plant Biol       Date:  2013-01-25       Impact factor: 26.379

7.  Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light.

Authors:  Fei Gan; Shuyi Zhang; Nathan C Rockwell; Shelley S Martin; J Clark Lagarias; Donald A Bryant
Journal:  Science       Date:  2014-08-21       Impact factor: 47.728

8.  Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.

Authors:  Antonio Emidio Fortunato; Marianne Jaubert; Gen Enomoto; Jean-Pierre Bouly; Raffaella Raniello; Michael Thaler; Shruti Malviya; Juliana Silva Bernardes; Fabrice Rappaport; Bernard Gentili; Marie J J Huysman; Alessandra Carbone; Chris Bowler; Maurizio Ribera d'Alcalà; Masahiko Ikeuchi; Angela Falciatore
Journal:  Plant Cell       Date:  2016-03-03       Impact factor: 11.277

9.  Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial origin.

Authors:  Thorsten Buchberger; Tilman Lamparter
Journal:  BMC Res Notes       Date:  2015-04-13

10.  Phytochrome diversity in green plants and the origin of canonical plant phytochromes.

Authors:  Fay-Wei Li; Michael Melkonian; Carl J Rothfels; Juan Carlos Villarreal; Dennis W Stevenson; Sean W Graham; Gane Ka-Shu Wong; Kathleen M Pryer; Sarah Mathews
Journal:  Nat Commun       Date:  2015-07-28       Impact factor: 14.919

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  23 in total

1.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.

Authors:  E Sethe Burgie; Jonathan A Clinger; Mitchell D Miller; Aaron S Brewster; Pierre Aller; Agata Butryn; Franklin D Fuller; Sheraz Gul; Iris D Young; Cindy C Pham; In-Sik Kim; Asmit Bhowmick; Lee J O'Riordan; Kyle D Sutherlin; Joshua V Heinemann; Alexander Batyuk; Roberto Alonso-Mori; Mark S Hunter; Jason E Koglin; Junko Yano; Vittal K Yachandra; Nicholas K Sauter; Aina E Cohen; Jan Kern; Allen M Orville; George N Phillips; Richard D Vierstra
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-18       Impact factor: 11.205

3.  Structural basis of molecular logic OR in a dual-sensor histidine kinase.

Authors:  Heewhan Shin; Zhong Ren; Xiaoli Zeng; Sepalika Bandara; Xiaojing Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-16       Impact factor: 11.205

4.  Phytochromes and Cyanobacteriochromes: Photoreceptor Molecules Incorporating a Linear Tetrapyrrole Chromophore.

Authors:  Keiji Fushimi; Rei Narikawa
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

5.  Influence of the PHY domain on the ms-photoconversion dynamics of a knotless phytochrome.

Authors:  Tobias Fischer; Lisa Köhler; Tanja Ott; Chen Song; Josef Wachtveitl; Chavdar Slavov
Journal:  Photochem Photobiol Sci       Date:  2022-06-10       Impact factor: 4.328

Review 6.  The Red Edge: Bilin-Binding Photoreceptors as Optogenetic Tools and Fluorescence Reporters.

Authors:  Kun Tang; Hannes M Beyer; Matias D Zurbriggen; Wolfgang Gärtner
Journal:  Chem Rev       Date:  2021-10-20       Impact factor: 72.087

7.  Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes.

Authors:  Ji-Young Song; Ha Yong Lee; Hee Wook Yang; Ji-Joon Song; J Clark Lagarias; Youn-Il Park
Journal:  J Biol Chem       Date:  2020-03-17       Impact factor: 5.157

8.  Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4.

Authors:  Sunghyuk Lim; Qinhong Yu; Sean M Gottlieb; Che-Wei Chang; Nathan C Rockwell; Shelley S Martin; Dorte Madsen; J Clark Lagarias; Delmar S Larsen; James B Ames
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

Review 9.  Bacteriophytochromes - from informative model systems of phytochrome function to powerful tools in cell biology.

Authors:  Geoffrey Gourinchas; Stefan Etzl; Andreas Winkler
Journal:  Curr Opin Struct Biol       Date:  2019-03-14       Impact factor: 6.809

10.  Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases.

Authors:  Matthew Blain-Hartung; Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Physiol       Date:  2021-10-05       Impact factor: 8.005

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