Literature DB >> 30878713

Bacteriophytochromes - from informative model systems of phytochrome function to powerful tools in cell biology.

Geoffrey Gourinchas1, Stefan Etzl1, Andreas Winkler2.   

Abstract

Bacteriophytochromes are a subfamily of the diverse light responsive phytochrome photoreceptors. Considering their preferential interaction with biliverdin IXα as endogenous cofactor, they have recently been used for creating optogenetic tools and engineering fluorescent probes. Ideal absorption characteristics for the activation of bacteriophytochrome-based systems in the therapeutic near-infrared window as well the availability of biliverdin in mammalian tissues have resulted in tremendous progress in re-engineering bacteriophytochromes for diverse applications. At the same time, both the structural analysis and the functional characterization of diverse naturally occurring bacteriophytochrome systems have unraveled remarkable differences in signaling mechanisms and have so far only touched the surface of the evolutionary diversity within the family of bacteriophytochromes. This review highlights recent findings and future challenges.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30878713      PMCID: PMC6625962          DOI: 10.1016/j.sbi.2019.02.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  72 in total

Review 1.  The family of phytochrome-like photoreceptors: diverse, complex and multi-colored, but very useful.

Authors:  Katrin Anders; Lars-Oliver Essen
Journal:  Curr Opin Struct Biol       Date:  2015-08-01       Impact factor: 6.809

2.  A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.

Authors:  Jeremiah R Wagner; Joseph S Brunzelle; Katrina T Forest; Richard D Vierstra
Journal:  Nature       Date:  2005-11-17       Impact factor: 49.962

3.  Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.

Authors:  Xiaojing Yang; Emina A Stojkovic; Jane Kuk; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

4.  The Photoconversion of Phytochrome Includes an Unproductive Shunt Reaction Pathway.

Authors:  David Buhrke; Uwe Kuhlmann; Norbert Michael; Peter Hildebrandt
Journal:  Chemphyschem       Date:  2018-01-26       Impact factor: 3.102

5.  A near-infrared BiFC reporter for in vivo imaging of protein-protein interactions.

Authors:  Grigory S Filonov; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2013-07-25

6.  Assembly of Agrobacterium phytochromes Agp1 and Agp2 with doubly locked bilin chromophores.

Authors:  Katsuhiko Inomata; Htoi Khawn; Li-Yi Chen; Hideki Kinoshita; Benjamin Zienicke; Isabel Molina; Tilman Lamparter
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

7.  Structural photoactivation of a full-length bacterial phytochrome.

Authors:  Alexander Björling; Oskar Berntsson; Heli Lehtivuori; Heikki Takala; Ashley J Hughes; Matthijs Panman; Maria Hoernke; Stephan Niebling; Léocadie Henry; Robert Henning; Irina Kosheleva; Vladimir Chukharev; Nikolai V Tkachenko; Andreas Menzel; Gemma Newby; Dmitry Khakhulin; Michael Wulff; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Sci Adv       Date:  2016-08-12       Impact factor: 14.136

8.  A naturally monomeric infrared fluorescent protein for protein labeling in vivo.

Authors:  Dan Yu; Michelle A Baird; John R Allen; Elizabeth S Howe; Matthew P Klassen; Anna Reade; Kalpana Makhijani; Yuanquan Song; Songmei Liu; Zehra Murthy; Shao-Qing Zhang; Orion D Weiner; Thomas B Kornberg; Yuh-Nung Jan; Michael W Davidson; Xiaokun Shu
Journal:  Nat Methods       Date:  2015-06-22       Impact factor: 28.547

9.  Conformational dynamics of the essential sensor histidine kinase WalK.

Authors:  Yongfei Cai; Mingyang Su; Ashfaq Ahmad; Xiaojie Hu; Jiayan Sang; Lingyuan Kong; Xingqiang Chen; Chen Wang; Jianwei Shuai; Aidong Han
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-09-27       Impact factor: 7.652

10.  Light-induced structural changes in a monomeric bacteriophytochrome.

Authors:  Heikki Takala; Stephan Niebling; Oskar Berntsson; Alexander Björling; Heli Lehtivuori; Heikki Häkkänen; Matthijs Panman; Emil Gustavsson; Maria Hoernke; Gemma Newby; Federico Zontone; Michael Wulff; Andreas Menzel; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Struct Dyn       Date:  2016-08-29       Impact factor: 2.920

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  14 in total

Review 1.  A light life together: photosensing in the plant microbiota.

Authors:  Aba Losi; Wolfgang Gärtner
Journal:  Photochem Photobiol Sci       Date:  2021-03-01       Impact factor: 3.982

2.  Characterisation of sequence-structure-function space in sensor-effector integrators of phytochrome-regulated diguanylate cyclases.

Authors:  Cornelia Böhm; Geoffrey Gourinchas; Sophie Zweytick; Elvira Hujdur; Martina Reiter; Sara Trstenjak; Christoph Wilhelm Sensen; Andreas Winkler
Journal:  Photochem Photobiol Sci       Date:  2022-07-05       Impact factor: 4.328

3.  Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy.

Authors:  David Buhrke; Norbert Michael; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-29       Impact factor: 12.779

4.  The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.

Authors:  Moona Kurttila; Stefan Etzl; Jessica Rumfeldt; Heikki Takala; Nadine Galler; Andreas Winkler; Janne A Ihalainen
Journal:  Photochem Photobiol Sci       Date:  2022-08-19       Impact factor: 4.328

5.  A genetically encoded far-red fluorescent calcium ion biosensor derived from a biliverdin-binding protein.

Authors:  Rina Hashizume; Hajime Fujii; Sohum Mehta; Keisuke Ota; Yong Qian; Wenchao Zhu; Mikhail Drobizhev; Yusuke Nasu; Jin Zhang; Haruhiko Bito; Robert E Campbell
Journal:  Protein Sci       Date:  2022-10       Impact factor: 6.993

Review 6.  The Red Edge: Bilin-Binding Photoreceptors as Optogenetic Tools and Fluorescence Reporters.

Authors:  Kun Tang; Hannes M Beyer; Matias D Zurbriggen; Wolfgang Gärtner
Journal:  Chem Rev       Date:  2021-10-20       Impact factor: 72.087

7.  Two-photon conversion of a bacterial phytochrome.

Authors:  Serge G Sokolovski; Evgeny A Zherebtsov; Rajiv K Kar; David Golonka; Robert Stabel; Nikolai B Chichkov; Andrei Gorodetsky; Igor Schapiro; Andreas Möglich; Edik U Rafailov
Journal:  Biophys J       Date:  2021-02-03       Impact factor: 4.033

8.  Cryo-Electron Microscopy of Arabidopsis thaliana Phytochrome A in Its Pr State Reveals Head-to-Head Homodimeric Architecture.

Authors:  Weixiao Yuan Wahlgren; David Golonka; Sebastian Westenhoff; Andreas Möglich
Journal:  Front Plant Sci       Date:  2021-04-21       Impact factor: 5.753

Review 9.  Signal transduction in photoreceptor histidine kinases.

Authors:  Andreas Möglich
Journal:  Protein Sci       Date:  2019-08-20       Impact factor: 6.725

10.  QM/MM Benchmarking of Cyanobacteriochrome Slr1393g3 Absorption Spectra.

Authors:  Christian Wiebeler; Igor Schapiro
Journal:  Molecules       Date:  2019-05-03       Impact factor: 4.411

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