Literature DB >> 28445462

Cell diversity and network dynamics in photosensitive human brain organoids.

Giorgia Quadrato1,2, Tuan Nguyen1,2, Evan Z Macosko2,3, John L Sherwood1,2, Sung Min Yang1, Daniel R Berger4, Natalie Maria1, Jorg Scholvin5, Melissa Goldman3, Justin P Kinney6, Edward S Boyden5, Jeff W Lichtman4, Ziv M Williams7, Steven A McCarroll2,3, Paola Arlotta1,2.   

Abstract

In vitro models of the developing brain such as three-dimensional brain organoids offer an unprecedented opportunity to study aspects of human brain development and disease. However, the cells generated within organoids and the extent to which they recapitulate the regional complexity, cellular diversity and circuit functionality of the brain remain undefined. Here we analyse gene expression in over 80,000 individual cells isolated from 31 human brain organoids. We find that organoids can generate a broad diversity of cells, which are related to endogenous classes, including cells from the cerebral cortex and the retina. Organoids could be developed over extended periods (more than 9 months), allowing for the establishment of relatively mature features, including the formation of dendritic spines and spontaneously active neuronal networks. Finally, neuronal activity within organoids could be controlled using light stimulation of photosensitive cells, which may offer a way to probe the functionality of human neuronal circuits using physiological sensory stimuli.

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Year:  2017        PMID: 28445462      PMCID: PMC5659341          DOI: 10.1038/nature22047

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  41 in total

1.  Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo.

Authors:  Paola Arlotta; Bradley J Molyneaux; Jinhui Chen; Jun Inoue; Ryo Kominami; Jeffrey D Macklis
Journal:  Neuron       Date:  2005-01-20       Impact factor: 17.173

2.  Transcriptome analysis and molecular signature of human retinal pigment epithelium.

Authors:  N V Strunnikova; A Maminishkis; J J Barb; F Wang; C Zhi; Y Sergeev; W Chen; A O Edwards; D Stambolian; G Abecasis; A Swaroop; P J Munson; S S Miller
Journal:  Hum Mol Genet       Date:  2010-04-01       Impact factor: 6.150

3.  Pharmacological characterization of non-NMDA subtypes of glutamate receptor in the neonatal rat hemisected spinal cord in vitro.

Authors:  S Zeman; D Lodge
Journal:  Br J Pharmacol       Date:  1992-06       Impact factor: 8.739

4.  Zika virus impairs growth in human neurospheres and brain organoids.

Authors:  Patricia P Garcez; Erick Correia Loiola; Rodrigo Madeiro da Costa; Luiza M Higa; Pablo Trindade; Rodrigo Delvecchio; Juliana Minardi Nascimento; Rodrigo Brindeiro; Amilcar Tanuri; Stevens K Rehen
Journal:  Science       Date:  2016-04-10       Impact factor: 47.728

5.  Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Authors:  Blue B Lake; Rizi Ai; Gwendolyn E Kaeser; Neeraj S Salathia; Yun C Yung; Rui Liu; Andre Wildberg; Derek Gao; Ho-Lim Fung; Song Chen; Raakhee Vijayaraghavan; Julian Wong; Allison Chen; Xiaoyan Sheng; Fiona Kaper; Richard Shen; Mostafa Ronaghi; Jian-Bing Fan; Wei Wang; Jerold Chun; Kun Zhang
Journal:  Science       Date:  2016-06-24       Impact factor: 47.728

6.  Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells.

Authors:  Tomasz J Nowakowski; Alex A Pollen; Elizabeth Di Lullo; Carmen Sandoval-Espinosa; Marina Bershteyn; Arnold R Kriegstein
Journal:  Cell Stem Cell       Date:  2016-03-30       Impact factor: 24.633

7.  Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure.

Authors:  Xuyu Qian; Ha Nam Nguyen; Mingxi M Song; Christopher Hadiono; Sarah C Ogden; Christy Hammack; Bing Yao; Gregory R Hamersky; Fadi Jacob; Chun Zhong; Ki-Jun Yoon; William Jeang; Li Lin; Yujing Li; Jai Thakor; Daniel A Berg; Ce Zhang; Eunchai Kang; Michael Chickering; David Nauen; Cheng-Ying Ho; Zhexing Wen; Kimberly M Christian; Pei-Yong Shi; Brady J Maher; Hao Wu; Peng Jin; Hengli Tang; Hongjun Song; Guo-Li Ming
Journal:  Cell       Date:  2016-04-22       Impact factor: 41.582

8.  Novel subtype-specific genes identify distinct subpopulations of callosal projection neurons.

Authors:  Bradley J Molyneaux; Paola Arlotta; Ryann M Fame; Jessica L MacDonald; Kyle L MacQuarrie; Jeffrey D Macklis
Journal:  J Neurosci       Date:  2009-09-30       Impact factor: 6.167

9.  Statistical significance of variables driving systematic variation in high-dimensional data.

Authors:  Neo Christopher Chung; John D Storey
Journal:  Bioinformatics       Date:  2014-10-21       Impact factor: 6.937

10.  Transcriptional comparison of human induced and primary midbrain dopaminergic neurons.

Authors:  Ninuo Xia; Pengbo Zhang; Fang Fang; Zhengyuan Wang; Megan Rothstein; Benjamin Angulo; Rosaria Chiang; James Taylor; Renee A Reijo Pera
Journal:  Sci Rep       Date:  2016-02-04       Impact factor: 4.379

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  342 in total

1.  Human CNS barrier-forming organoids with cerebrospinal fluid production.

Authors:  Laura Pellegrini; Claudia Bonfio; Jessica Chadwick; Farida Begum; Mark Skehel; Madeline A Lancaster
Journal:  Science       Date:  2020-06-11       Impact factor: 47.728

2.  An in vivo model of functional and vascularized human brain organoids.

Authors:  Abed AlFatah Mansour; J Tiago Gonçalves; Cooper W Bloyd; Hao Li; Sarah Fernandes; Daphne Quang; Stephen Johnston; Sarah L Parylak; Xin Jin; Fred H Gage
Journal:  Nat Biotechnol       Date:  2018-04-16       Impact factor: 54.908

3.  Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity.

Authors:  Joshua D Welch; Velina Kozareva; Ashley Ferreira; Charles Vanderburg; Carly Martin; Evan Z Macosko
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Review 4.  Brain organoids: advances, applications and challenges.

Authors:  Xuyu Qian; Hongjun Song; Guo-Li Ming
Journal:  Development       Date:  2019-04-16       Impact factor: 6.868

Review 5.  New frontiers in modeling tuberous sclerosis with human stem cell-derived neurons and brain organoids.

Authors:  John D Blair; Helen S Bateup
Journal:  Dev Dyn       Date:  2019-05-23       Impact factor: 3.780

6.  A reproducible scaffold-free 3D organoid model to study neoplastic progression in breast cancer.

Authors:  Sabra I Djomehri; Boris Burman; Maria E Gonzalez; Shuichi Takayama; Celina G Kleer
Journal:  J Cell Commun Signal       Date:  2018-12-04       Impact factor: 5.782

7.  Advanced Materials to Enhance Central Nervous System Tissue Modeling and Cell Therapy.

Authors:  Riya J Muckom; Rocío G Sampayo; Hunter J Johnson; David V Schaffer
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Review 8.  Neuronal cell-type classification: challenges, opportunities and the path forward.

Authors:  Hongkui Zeng; Joshua R Sanes
Journal:  Nat Rev Neurosci       Date:  2017-08-03       Impact factor: 34.870

Review 9.  Enhancing our brains: Genomic mechanisms underlying cortical evolution.

Authors:  Caitlyn Mitchell; Debra L Silver
Journal:  Semin Cell Dev Biol       Date:  2017-08-31       Impact factor: 7.727

Review 10.  Human organoids to model the developing human neocortex in health and disease.

Authors:  Shokoufeh Khakipoor; Elizabeth E Crouch; Simone Mayer
Journal:  Brain Res       Date:  2020-03-30       Impact factor: 3.252

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