Literature DB >> 28864345

Enhancing our brains: Genomic mechanisms underlying cortical evolution.

Caitlyn Mitchell1, Debra L Silver2.   

Abstract

Our most distinguishing higher cognitive functions are controlled by the cerebral cortex. Comparative studies detail abundant anatomical and cellular features unique to the human developing and adult neocortex. Emerging genomic studies have further defined vast differences distinguishing developing human neocortices from related primates. These human-specific changes can affect gene function and/or expression, and result from structural variations such as chromosomal deletions and duplications, or from point mutations in coding and noncoding regulatory regions. Here, we review this rapidly growing field which aims to identify and characterize genetic loci unique to the human cerebral cortex. We catalog known human-specific genomic changes distinct from other primates, including those whose function has been interrogated in animal models. We also discuss how new model systems and technologies such as single cell RNA sequencing, primate iPSCs, and gene editing, are enabling the field to gain unprecedented resolution into function of these human-specific changes. Some neurological disorders are thought to uniquely present in humans, thus reinforcing the need to comprehensively understand human-specific gene expression in the developing brain.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Cortical development; Enhancer; Gene expression; HAR; iPSC

Mesh:

Year:  2017        PMID: 28864345      PMCID: PMC5832537          DOI: 10.1016/j.semcdb.2017.08.045

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  125 in total

1.  A neuronal morphologic type unique to humans and great apes.

Authors:  E A Nimchinsky; E Gilissen; J M Allman; D P Perl; J M Erwin; P R Hof
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

2.  Differences in DNA methylation patterns between humans and chimpanzees.

Authors:  Wolfgang Enard; Anne Fassbender; Fabian Model; Péter Adorján; Svante Pääbo; Alexander Olek
Journal:  Curr Biol       Date:  2004-02-17       Impact factor: 10.834

3.  Unsupervised lineage-based characterization of primate precursors reveals high proliferative and morphological diversity in the OSVZ.

Authors:  Michael Pfeiffer; Marion Betizeau; Julie Waltispurger; Sabina Sara Pfister; Rodney J Douglas; Henry Kennedy; Colette Dehay
Journal:  J Comp Neurol       Date:  2015-07-07       Impact factor: 3.215

Review 4.  Human brain evolution: transcripts, metabolites and their regulators.

Authors:  Mehmet Somel; Xiling Liu; Philipp Khaitovich
Journal:  Nat Rev Neurosci       Date:  2013-01-17       Impact factor: 34.870

5.  SRGAP2 and Its Human-Specific Paralog Co-Regulate the Development of Excitatory and Inhibitory Synapses.

Authors:  Matteo Fossati; Rocco Pizzarelli; Ewoud R Schmidt; Justine V Kupferman; David Stroebel; Franck Polleux; Cécile Charrier
Journal:  Neuron       Date:  2016-06-30       Impact factor: 17.173

6.  Cis-regulatory control of corticospinal system development and evolution.

Authors:  Sungbo Shim; Kenneth Y Kwan; Mingfeng Li; Veronique Lefebvre; Nenad Sestan
Journal:  Nature       Date:  2012-05-30       Impact factor: 49.962

7.  Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility.

Authors:  Xander Nuttle; Giuliana Giannuzzi; Michael H Duyzend; Joshua G Schraiber; Iñigo Narvaiza; Peter H Sudmant; Osnat Penn; Giorgia Chiatante; Maika Malig; John Huddleston; Chris Benner; Francesca Camponeschi; Simone Ciofi-Baffoni; Holly A F Stessman; Maria C N Marchetto; Laura Denman; Lana Harshman; Carl Baker; Archana Raja; Kelsi Penewit; Nicolette Janke; W Joyce Tang; Mario Ventura; Lucia Banci; Francesca Antonacci; Joshua M Akey; Chris T Amemiya; Fred H Gage; Alexandre Reymond; Evan E Eichler
Journal:  Nature       Date:  2016-08-03       Impact factor: 49.962

8.  Enhancer divergence and cis-regulatory evolution in the human and chimp neural crest.

Authors:  Sara L Prescott; Rajini Srinivasan; Maria Carolina Marchetto; Irina Grishina; Iñigo Narvaiza; Licia Selleri; Fred H Gage; Tomek Swigut; Joanna Wysocka
Journal:  Cell       Date:  2015-09-10       Impact factor: 41.582

9.  Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.

Authors:  J Gray Camp; Farhath Badsha; Marta Florio; Sabina Kanton; Tobias Gerber; Michaela Wilsch-Bräuninger; Eric Lewitus; Alex Sykes; Wulf Hevers; Madeline Lancaster; Juergen A Knoblich; Robert Lachmann; Svante Pääbo; Wieland B Huttner; Barbara Treutlein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-07       Impact factor: 11.205

10.  2D and 3D Stem Cell Models of Primate Cortical Development Identify Species-Specific Differences in Progenitor Behavior Contributing to Brain Size.

Authors:  Tomoki Otani; Maria C Marchetto; Fred H Gage; Benjamin D Simons; Frederick J Livesey
Journal:  Cell Stem Cell       Date:  2016-03-31       Impact factor: 25.269

View more
  8 in total

Review 1.  Human Models Are Needed for Studying Human Neurodevelopmental Disorders.

Authors:  Xinyu Zhao; Anita Bhattacharyya
Journal:  Am J Hum Genet       Date:  2018-12-06       Impact factor: 11.025

2.  Global Repeat Map (GRM): Advantageous Method for Discovery of Largest Higher-Order Repeats (HORs) in Neuroblastoma Breakpoint Family (NBPF) Genes, in Hornerin Exon and in Chromosome 21 Centromere.

Authors:  Vladimir Paar; Ines Vlahović; Marija Rosandić; Matko Glunčić
Journal:  Prog Mol Subcell Biol       Date:  2021

3.  Tandemly repeated NBPF HOR copies (Olduvai triplets): Possible impact on human brain evolution.

Authors:  Matko Glunčić; Ines Vlahović; Marija Rosandić; Vladimir Paar
Journal:  Life Sci Alliance       Date:  2022-10-19

4.  Extracellular matrix-inducing Sox9 promotes both basal progenitor proliferation and gliogenesis in developing neocortex.

Authors:  Ayse Güven; Nereo Kalebic; Katherine R Long; Marta Florio; Samir Vaid; Holger Brandl; Denise Stenzel; Wieland B Huttner
Journal:  Elife       Date:  2020-03-19       Impact factor: 8.140

5.  Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex.

Authors:  Marta Florio; Michael Heide; Anneline Pinson; Holger Brandl; Mareike Albert; Sylke Winkler; Pauline Wimberger; Wieland B Huttner; Michael Hiller
Journal:  Elife       Date:  2018-03-21       Impact factor: 8.140

6.  The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area.

Authors:  Amanda K Tilot; Ekaterina A Khramtsova; Dan Liang; Katrina L Grasby; Neda Jahanshad; Jodie Painter; Lucía Colodro-Conde; Janita Bralten; Derrek P Hibar; Penelope A Lind; Siyao Liu; Sarah M Brotman; Paul M Thompson; Sarah E Medland; Fabio Macciardi; Barbara E Stranger; Lea K Davis; Simon E Fisher; Jason L Stein
Journal:  Cereb Cortex       Date:  2021-03-05       Impact factor: 5.357

Review 7.  The use of nonhuman primates in studies of noise injury and treatment.

Authors:  Jane A Burton; Michelle D Valero; Troy A Hackett; Ramnarayan Ramachandran
Journal:  J Acoust Soc Am       Date:  2019-11       Impact factor: 2.482

8.  Quantitative uniqueness of human brain evolution revealed through phylogenetic comparative analysis.

Authors:  Ian F Miller; Robert A Barton; Charles L Nunn
Journal:  Elife       Date:  2019-01-31       Impact factor: 8.140

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.