Literature DB >> 28438997

Nucleophilic water attack is not a possible mechanism for O-O bond formation in photosystem II.

Per E M Siegbahn1.   

Abstract

Two different types of mechanisms are at present suggested for the O-O bond-formation step in photosystem II. The first one is a coupling between an oxyl radical and a bridging oxo. The second one is a nucleophilic water attack on a terminal oxo (or oxyl) group. In the present short paper, the six most reasonable versions of the latter mechanism have been studied and compared with the oxo-oxyl mechanism. The barriers are found to be much too high for the water attack, and that mechanism can therefore safely be ruled out. The reason is that the protonated peroxide product is always very high in energy.

Entities:  

Keywords:  O2 formation; density functional theory; mechanism; photosynthesis

Mesh:

Substances:

Year:  2017        PMID: 28438997      PMCID: PMC5441723          DOI: 10.1073/pnas.1617843114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Alternative mechanisms for O2 release and O-O bond formation in the oxygen evolving complex of photosystem II.

Authors:  Xichen Li; Per E M Siegbahn
Journal:  Phys Chem Chem Phys       Date:  2015-05-14       Impact factor: 3.676

2.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

3.  The effect of backbone constraints: the case of water oxidation by the oxygen-evolving complex in PSII.

Authors:  Per E M Siegbahn
Journal:  Chemphyschem       Date:  2011-09-16       Impact factor: 3.102

Review 4.  Reflections on substrate water and dioxygen formation.

Authors:  Nicholas Cox; Johannes Messinger
Journal:  Biochim Biophys Acta       Date:  2013-02-01

5.  Photosynthesis. Electronic structure of the oxygen-evolving complex in photosystem II prior to O-O bond formation.

Authors:  Nicholas Cox; Marius Retegan; Frank Neese; Dimitrios A Pantazis; Alain Boussac; Wolfgang Lubitz
Journal:  Science       Date:  2014-08-14       Impact factor: 47.728

6.  O-O bond formation in the S(4) state of the oxygen-evolving complex in photosystem II.

Authors:  Per E M Siegbahn
Journal:  Chemistry       Date:  2006-12-13       Impact factor: 5.236

7.  Chemical Equilibrium Models for the S3 State of the Oxygen-Evolving Complex of Photosystem II.

Authors:  Hiroshi Isobe; Mitsuo Shoji; Jian-Ren Shen; Kizashi Yamaguchi
Journal:  Inorg Chem       Date:  2015-12-30       Impact factor: 5.165

8.  Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses.

Authors:  Michihiro Suga; Fusamichi Akita; Kunio Hirata; Go Ueno; Hironori Murakami; Yoshiki Nakajima; Tetsuya Shimizu; Keitaro Yamashita; Masaki Yamamoto; Hideo Ago; Jian-Ren Shen
Journal:  Nature       Date:  2014-11-26       Impact factor: 49.962

9.  Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride.

Authors:  Albert Guskov; Jan Kern; Azat Gabdulkhakov; Matthias Broser; Athina Zouni; Wolfram Saenger
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

10.  A structure-consistent mechanism for dioxygen formation in photosystem II.

Authors:  Per E M Siegbahn
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

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  10 in total

1.  Theoretical study of the mechanism of the manganese catalase KatB.

Authors:  Xi-Xi Yang; Qiu-Yun Mao; Xiao-Ting An; Xi-Chen Li; Per E M Siegbahn; Guang-Ju Chen; Hong-Wei Tan
Journal:  J Biol Inorg Chem       Date:  2018-12-05       Impact factor: 3.358

2.  Calculation of Metallocene Ionization Potentials via Auxiliary Field Quantum Monte Carlo: Toward Benchmark Quantum Chemistry for Transition Metals.

Authors:  Benjamin Rudshteyn; John L Weber; Dilek Coskun; Pierre A Devlaminck; Shiwei Zhang; David R Reichman; James Shee; Richard A Friesner
Journal:  J Chem Theory Comput       Date:  2022-04-04       Impact factor: 6.578

3.  Mechanistic Parameters of Electrocatalytic Water Oxidation on LiMn2 O4 in Comparison to Natural Photosynthesis.

Authors:  Lennart Köhler; Majid Ebrahimizadeh Abrishami; Vladimir Roddatis; Janis Geppert; Marcel Risch
Journal:  ChemSusChem       Date:  2017-10-27       Impact factor: 8.928

4.  Cluster size convergence for the energetics of the oxygen evolving complex in PSII.

Authors:  Per E M Siegbahn; Xichen Li
Journal:  J Comput Chem       Date:  2017-06-30       Impact factor: 3.376

5.  O2 evolution and recovery of the water-oxidizing enzyme.

Authors:  Keisuke Kawashima; Tomohiro Takaoka; Hiroki Kimura; Keisuke Saito; Hiroshi Ishikita
Journal:  Nat Commun       Date:  2018-03-28       Impact factor: 14.919

6.  Chemical Activity of the Peroxide/Oxide Redox Couple: Case Study of Ba5Ru2O11 in Aqueous and Organic Solvents.

Authors:  Alexis Grimaud; Antonella Iadecola; Dmitry Batuk; Matthieu Saubanère; Artem M Abakumov; John W Freeland; Jordi Cabana; Haifeng Li; Marie-Liesse Doublet; Gwenaëlle Rousse; Jean-Marie Tarascon
Journal:  Chem Mater       Date:  2018-05-21       Impact factor: 9.811

Review 7.  A quantum chemical approach for the mechanisms of redox-active metalloenzymes.

Authors:  Per E M Siegbahn
Journal:  RSC Adv       Date:  2021-01-15       Impact factor: 3.361

8.  Molecular Principles of Redox-Coupled Protonation Dynamics in Photosystem II.

Authors:  Friederike Allgöwer; Ana P Gamiz-Hernandez; A William Rutherford; Ville R I Kaila
Journal:  J Am Chem Soc       Date:  2022-04-14       Impact factor: 16.383

9.  Reversible Structural Isomerization of Nature's Water Oxidation Catalyst Prior to O-O Bond Formation.

Authors:  Yu Guo; Johannes Messinger; Lars Kloo; Licheng Sun
Journal:  J Am Chem Soc       Date:  2022-06-24       Impact factor: 16.383

Review 10.  Mimicking the Oxygen-Evolving Center in Photosynthesis.

Authors:  Yang Chen; Boran Xu; Ruoqing Yao; Changhui Chen; Chunxi Zhang
Journal:  Front Plant Sci       Date:  2022-07-07       Impact factor: 6.627

  10 in total

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