Literature DB >> 18680116

A structure-consistent mechanism for dioxygen formation in photosystem II.

Per E M Siegbahn1.   

Abstract

In recent DFT studies a new mechanism for O-O bond formation at the oxygen evolving center (OEC) in photosystem II has been suggested. With the structure of the S(4) state required for that mechanism, the structures of the lower S states are investigated herein by adding protons and electrons. A model was used including the full amino acids for the ones ligating the OEC, and in which the backbone positions were held fixed from the X-ray structure. The only charged second-shell ligand Arg357 was also included. An optimized structure for the S(1) state was reached with a large similarity to one of those suggested by EXAFS. A full catalytic cycle was derived which can rationalize the structural relaxation in the S(2) to S(3) transition, and the fact that only an electron leaves in the transition before. Water is suggested to bind to the OEC in the S(2) to S(3), and S(4) to S(0) transitions. A new possibility for water exchange is suggested from the final energy diagram. The optimal O-O bond formation occurs between an oxygen radical and an oxo ligand. The alternative mechanism, where the oxygen radical reacts with an external water, has a barrier about 20 kcal mol(-1) higher.

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Year:  2008        PMID: 18680116     DOI: 10.1002/chem.200800445

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  29 in total

1.  Synthetic model of the asymmetric [Mn3CaO4] cubane core of the oxygen-evolving complex of photosystem II.

Authors:  Shreya Mukherjee; Jamie A Stull; Junko Yano; Theocharis C Stamatatos; Konstantina Pringouri; Troy A Stich; Khalil A Abboud; R David Britt; Vittal K Yachandra; George Christou
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Computational chemistry: a multitude of spins.

Authors:  Jeremy N Harvey
Journal:  Nat Chem       Date:  2013-08       Impact factor: 24.427

3.  Entangled quantum electronic wavefunctions of the Mn₄CaO₅ cluster in photosystem II.

Authors:  Yuki Kurashige; Garnet Kin-Lic Chan; Takeshi Yanai
Journal:  Nat Chem       Date:  2013-06-09       Impact factor: 24.427

4.  Effects of methanol on the Si-state transitions in photosynthetic water-splitting.

Authors:  Birgit Nöring; Dmitriy Shevela; Gernot Renger; Johannes Messinger
Journal:  Photosynth Res       Date:  2008-09-26       Impact factor: 3.573

5.  Thermodynamic limitations of photosynthetic water oxidation at high proton concentrations.

Authors:  Ivelina Zaharieva; Jörg M Wichmann; Holger Dau
Journal:  J Biol Chem       Date:  2011-04-04       Impact factor: 5.157

6.  Synthetic cluster models of biological and heterogeneous manganese catalysts for O2 evolution.

Authors:  Emily Y Tsui; Jacob S Kanady; Theodor Agapie
Journal:  Inorg Chem       Date:  2013-12-16       Impact factor: 5.165

7.  Activation of a water molecule using a mononuclear Mn complex: from Mn-aquo, to Mn-hydroxo, to Mn-oxyl via charge compensation.

Authors:  Benedikt Lassalle-Kaiser; Christelle Hureau; Dimitrios A Pantazis; Yulia Pushkar; Régis Guillot; Vittal K Yachandra; Junko Yano; Frank Neese; Elodie Anxolabéhère-Mallart
Journal:  Energy Environ Sci       Date:  2010-07-01       Impact factor: 38.532

8.  Nucleophilic water attack is not a possible mechanism for O-O bond formation in photosystem II.

Authors:  Per E M Siegbahn
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-24       Impact factor: 11.205

9.  Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation.

Authors:  Faisal Hammad Mekky Koua; Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-20       Impact factor: 11.205

10.  Is Mn-Bound Substrate Water Protonated in the S(2) State of Photosystem II?

Authors:  Ji-Hu Su; Johannes Messinger
Journal:  Appl Magn Reson       Date:  2009-11-13       Impact factor: 0.831

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