Literature DB >> 284381

Do cleavages of amides by serine proteases occur through a stepwise pathway involving tetrahedral intermediates?

M Komiyama, M L Bender.   

Abstract

The mechanism of the serine protease-catalyzed cleavage of amides (acylation) was examined in terms of the basicity of the functional groups participating in the catalysis. It is proposed that the reaction does not proceed through a stepwise pathway, as opposed to the cleavage of esters and anilides, which start with general base-catalyzed formation of the tetrahedral intermediate followed by its general acid-catalyzed breakdown. Instead, the proton abstracted from the hydroxyl group of the serine by the imidazolyl group of the histidine is donated to the nitrogen atom of the leaving group of the amide before the bond between the carbonyl carbon atom of the amide and the attacking serine oxygen atom is completed. Reactions proceed by a SN2-like reaction through the cooperation of acid catalysis by the imidazolyl cation and nucleophilic attack by the serine. The mechanisms of the enzymatic hydrolyses of anilides and esters proceed through a discrete tetrahedral intermediate, but the enzymatic hydrolyses of amides probably do not.

Entities:  

Mesh:

Substances:

Year:  1979        PMID: 284381      PMCID: PMC382987          DOI: 10.1073/pnas.76.2.557

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  X-ray crystallographic study of boronic acid adducts with subtilisin BPN' (Novo). A model for the catalytic transition state.

Authors:  D A Matthews; R A Alden; J J Birktoft; S T Freer; J Kraut
Journal:  J Biol Chem       Date:  1975-09-25       Impact factor: 5.157

2.  Re-examination of the charge relay system in subtilisin comparison with other serine proteases.

Authors:  D A Matthews; R A Alden; J J Birktoft; T Freer; J Kraut
Journal:  J Biol Chem       Date:  1977-12-25       Impact factor: 5.157

Review 3.  Chymotrypsins.

Authors:  M L Bender; J V Killheffer
Journal:  CRC Crit Rev Biochem       Date:  1973-04

4.  Studies of the activity of chymotrypsin.

Authors:  G P Hess; J McConn; E Ku; G McConkey
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1970-02-12       Impact factor: 6.237

5.  The mechanism of the aminolysis of acetate esters.

Authors:  A C Satterthwait; W P Jencks
Journal:  J Am Chem Soc       Date:  1974-10-30       Impact factor: 15.419

6.  Carbon nuclear magnetic resonance studies of the histidine residue in alpha-lytic protease. Implications for the catalytic mechanism of serine proteases.

Authors:  M W Hunkapiller; S H Smallcombe; D R Whitaker; J H Richards
Journal:  Biochemistry       Date:  1973-11-06       Impact factor: 3.162

7.  Acylation of alpha-chymotrypsin by oxygen and sulfur esters of specific substrates: kinetic evidence for a tetrahedral intermediate.

Authors:  H Hiroara; M L Bender; R S Stark
Journal:  Proc Natl Acad Sci U S A       Date:  1974-05       Impact factor: 11.205

8.  Mechanism of hydrolysis by serine proteases: direct determination of the pKa's of aspartyl-102 and aspartyl-194 in bovine trypsin using difference infrared spectroscopy.

Authors:  R E Koeppe; R M Stroud
Journal:  Biochemistry       Date:  1976-08-10       Impact factor: 3.162

9.  Mechanism of action of serine proteases: tetrahedral intermediate and concerted proton transfer.

Authors:  M W Hunkapiller; M D Forgac; J H Richards
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

10.  Detection of a tetrahedral intermediate in the trypsin-catalysed hydrolysis of specific ring-activated anilides.

Authors:  D D Petkov
Journal:  Biochim Biophys Acta       Date:  1978-04-12
View more
  7 in total

1.  An uncharged amine in the transition state of the ribosomal peptidyl transfer reaction.

Authors:  David A Kingery; Emmanuel Pfund; Rebecca M Voorhees; Kensuke Okuda; Ingo Wohlgemuth; David E Kitchen; Marina V Rodnina; Scott A Strobel
Journal:  Chem Biol       Date:  2008-05

2.  The nature of enzyme catalysis in trypsin.

Authors:  S J Weiner; G L Seibel; P A Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

Review 3.  Current problems in mechanistic studies of serine and cysteine proteinases.

Authors:  L Polgár; P Halász
Journal:  Biochem J       Date:  1982-10-01       Impact factor: 3.857

4.  A 13C-n.m.r. investigation of the ionizations within an inhibitor--alpha-chymotrypsin complex. Evidence that both alpha-chymotrypsin and trypsin stabilize a hemiketal oxyanion by similar mechanisms.

Authors:  M D Finucane; E A Hudson; J P Malthouse
Journal:  Biochem J       Date:  1989-03-15       Impact factor: 3.857

5.  Crystal structures of human carboxylesterase 1 in covalent complexes with the chemical warfare agents soman and tabun.

Authors:  Christopher D Fleming; Carol C Edwards; Stephen D Kirby; Donald M Maxwell; Philip M Potter; Douglas M Cerasoli; Matthew R Redinbo
Journal:  Biochemistry       Date:  2007-04-04       Impact factor: 3.162

6.  A study of the stabilization of tetrahedral adducts by trypsin and delta-chymotrypsin.

Authors:  M D Finucane; J P Malthouse
Journal:  Biochem J       Date:  1992-09-15       Impact factor: 3.857

7.  A 13C-n.m.r. investigation of ionizations within a trypsin-inhibitor complex. Evidence that the pKa of histidine-57 is raised by interaction with the hemiketal oxyanion.

Authors:  W U Primrose; A I Scott; N E Mackenzie; J P Malthouse
Journal:  Biochem J       Date:  1985-11-01       Impact factor: 3.857

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.