Literature DB >> 28435990

QSAR modeling for predicting mutagenic toxicity of diverse chemicals for regulatory purposes.

Nikita Basant1, Shikha Gupta2.   

Abstract

The safety assessment process of chemicals requires information on their mutagenic potential. The experimental determination of mutagenicity of a large number of chemicals is tedious and time and cost intensive, thus compelling for alternative methods. We have established local and global QSAR models for discriminating low and high mutagenic compounds and predicting their mutagenic activity in a quantitative manner in Salmonella typhimurium (TA) bacterial strains (TA98 and TA100). The decision treeboost (DTB)-based classification QSAR models discriminated among two categories with accuracies of >96% and the regression QSAR models precisely predicted the mutagenic activity of diverse chemicals yielding high correlations (R 2) between the experimental and model-predicted values in the respective training (>0.96) and test (>0.94) sets. The test set root mean squared error (RMSE) and mean absolute error (MAE) values emphasized the usefulness of the developed models for predicting new compounds. Relevant structural features of diverse chemicals that were responsible and influence the mutagenic activity were identified. The applicability domains of the developed models were defined. The developed models can be used as tools for screening new chemicals for their mutagenicity assessment for regulatory purpose.

Entities:  

Keywords:  Chemicals; Decision treeboost; Genotoxicity; Mutagenic activity; Salmonella typhimurium

Mesh:

Substances:

Year:  2017        PMID: 28435990     DOI: 10.1007/s11356-017-8903-y

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  46 in total

1.  Prediction of mutagenicity of aromatic and heteroaromatic amines from structure: a hierarchical QSAR approach.

Authors:  S C Basak; D R Mills; A T Balaban; B D Gute
Journal:  J Chem Inf Comput Sci       Date:  2001 May-Jun

2.  Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The report and recommendations of ECVAM Workshop 52.

Authors:  Tatiana I Netzeva; Andrew Worth; Tom Aldenberg; Romualdo Benigni; Mark T D Cronin; Paolo Gramatica; Joanna S Jaworska; Scott Kahn; Gilles Klopman; Carol A Marchant; Glenn Myatt; Nina Nikolova-Jeliazkova; Grace Y Patlewicz; Roger Perkins; David Roberts; Terry Schultz; David W Stanton; Johannes J M van de Sandt; Weida Tong; Gilman Veith; Chihae Yang
Journal:  Altern Lab Anim       Date:  2005-04       Impact factor: 1.303

Review 3.  Structure-activity relationship studies of chemical mutagens and carcinogens: mechanistic investigations and prediction approaches.

Authors:  Romualdo Benigni
Journal:  Chem Rev       Date:  2005-05       Impact factor: 60.622

4.  QSAR modelling for mutagenic potency of heteroaromatic amines by optimal SMILES-based descriptors.

Authors:  Andrey A Toropov; Alla P Toropova; Emilio Benfenati
Journal:  Chem Biol Drug Des       Date:  2009-03       Impact factor: 2.817

5.  Beware of R(2): Simple, Unambiguous Assessment of the Prediction Accuracy of QSAR and QSPR Models.

Authors:  D L J Alexander; A Tropsha; David A Winkler
Journal:  J Chem Inf Model       Date:  2015-07-09       Impact factor: 4.956

6.  Modeling uptake of nanoparticles in multiple human cells using structure-activity relationships and intercellular uptake correlations.

Authors:  Nikita Basant; Shikha Gupta
Journal:  Nanotoxicology       Date:  2016-11-18       Impact factor: 5.913

7.  Predicting aquatic toxicities of chemical pesticides in multiple test species using nonlinear QSTR modeling approaches.

Authors:  Nikita Basant; Shikha Gupta; Kunwar P Singh
Journal:  Chemosphere       Date:  2015-07-02       Impact factor: 7.086

8.  Structure-activity relationships derived by machine learning: the use of atoms and their bond connectivities to predict mutagenicity by inductive logic programming.

Authors:  R D King; S H Muggleton; A Srinivasan; M J Sternberg
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

9.  Mutagenic activities and physicochemical properties of selected nitrobenzanthrones.

Authors:  Takeji Takamura-Enya; Hitomi Suzuki; Yoshiharu Hisamatsu
Journal:  Mutagenesis       Date:  2006-10-09       Impact factor: 3.000

10.  Approaches for externally validated QSAR modelling of Nitrated Polycyclic Aromatic Hydrocarbon mutagenicity.

Authors:  P Gramatica; P Pilutti; E Papa
Journal:  SAR QSAR Environ Res       Date:  2007 Jan-Mar       Impact factor: 3.000

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  1 in total

1.  QSAR model for predicting the toxicity of organic compounds to fathead minnow.

Authors:  Qingzhu Jia; Yunpeng Zhao; Fangyou Yan; Qiang Wang
Journal:  Environ Sci Pollut Res Int       Date:  2018-10-22       Impact factor: 4.223

  1 in total

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