Literature DB >> 28428048

Multi-center machine learning in imaging psychiatry: A meta-model approach.

Petr Dluhoš1, Daniel Schwarz2, Wiepke Cahn3, Neeltje van Haren3, René Kahn3, Filip Španiel4, Jiří Horáček4, Tomáš Kašpárek5, Hugo Schnack3.   

Abstract

One of the biggest problems in automated diagnosis of psychiatric disorders from medical images is the lack of sufficiently large samples for training. Sample size is especially important in the case of highly heterogeneous disorders such as schizophrenia, where machine learning models built on relatively low numbers of subjects may suffer from poor generalizability. Via multicenter studies and consortium initiatives researchers have tried to solve this problem by combining data sets from multiple sites. The necessary sharing of (raw) data is, however, often hindered by legal and ethical issues. Moreover, in the case of very large samples, the computational complexity might become too large. The solution to this problem could be distributed learning. In this paper we investigated the possibility to create a meta-model by combining support vector machines (SVM) classifiers trained on the local datasets, without the need for sharing medical images or any other personal data. Validation was done in a 4-center setup comprising of 480 first-episode schizophrenia patients and healthy controls in total. We built SVM models to separate patients from controls based on three different kinds of imaging features derived from structural MRI scans, and compared models built on the joint multicenter data to the meta-models. The results showed that the combined meta-model had high similarity to the model built on all data pooled together and comparable classification performance on all three imaging features. Both similarity and performance was superior to that of the local models. We conclude that combining models is thus a viable alternative that facilitates data sharing and creating bigger and more informative models.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Machine learning; classification; combining models; first-episode schizophrenia; meta-model; multi-center; prediction; support vector machines (SVM)

Mesh:

Year:  2017        PMID: 28428048     DOI: 10.1016/j.neuroimage.2017.03.027

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  11 in total

1.  NEURO-LEARN: a Solution for Collaborative Pattern Analysis of Neuroimaging Data.

Authors:  Bingye Lei; Fengchun Wu; Jing Zhou; Dongsheng Xiong; Kaixi Wang; Lingyin Kong; Pengfei Ke; Jun Chen; Yuping Ning; Xiaobo Li; Zhiming Xiang; Kai Wu
Journal:  Neuroinformatics       Date:  2021-01

2.  Constrained generative adversarial network ensembles for sharable synthetic medical images.

Authors:  Engin Dikici; Matthew Bigelow; Richard D White; Barbaros S Erdal; Luciano M Prevedello
Journal:  J Med Imaging (Bellingham)       Date:  2021-04-10

3.  Detecting Neuroimaging Biomarkers for Psychiatric Disorders: Sample Size Matters.

Authors:  Hugo G Schnack; René S Kahn
Journal:  Front Psychiatry       Date:  2016-03-31       Impact factor: 4.157

4.  Predicting major mental illness: ethical and practical considerations.

Authors:  Stephen M Lawrie; Sue Fletcher-Watson; Heather C Whalley; Andrew M McIntosh
Journal:  BJPsych Open       Date:  2019-03

5.  Systematic Review of Privacy-Preserving Distributed Machine Learning From Federated Databases in Health Care.

Authors:  Fadila Zerka; Samir Barakat; Sean Walsh; Marta Bogowicz; Ralph T H Leijenaar; Arthur Jochems; Benjamin Miraglio; David Townend; Philippe Lambin
Journal:  JCO Clin Cancer Inform       Date:  2020-03

6.  Using Machine Learning and Structural Neuroimaging to Detect First Episode Psychosis: Reconsidering the Evidence.

Authors:  Sandra Vieira; Qi-Yong Gong; Walter H L Pinaya; Cristina Scarpazza; Stefania Tognin; Benedicto Crespo-Facorro; Diana Tordesillas-Gutierrez; Victor Ortiz-García; Esther Setien-Suero; Floortje E Scheepers; Neeltje E M Van Haren; Tiago R Marques; Robin M Murray; Anthony David; Paola Dazzan; Philip McGuire; Andrea Mechelli
Journal:  Schizophr Bull       Date:  2020-01-04       Impact factor: 7.348

7.  Using structural MRI to identify bipolar disorders - 13 site machine learning study in 3020 individuals from the ENIGMA Bipolar Disorders Working Group.

Authors:  Abraham Nunes; Hugo G Schnack; Christopher R K Ching; Ingrid Agartz; Theophilus N Akudjedu; Martin Alda; Dag Alnæs; Silvia Alonso-Lana; Jochen Bauer; Bernhard T Baune; Erlend Bøen; Caterina Del Mar Bonnin; Geraldo F Busatto; Erick J Canales-Rodríguez; Dara M Cannon; Xavier Caseras; Tiffany M Chaim-Avancini; Udo Dannlowski; Ana M Díaz-Zuluaga; Bruno Dietsche; Nhat Trung Doan; Edouard Duchesnay; Torbjørn Elvsåshagen; Daniel Emden; Lisa T Eyler; Mar Fatjó-Vilas; Pauline Favre; Sonya F Foley; Janice M Fullerton; David C Glahn; Jose M Goikolea; Dominik Grotegerd; Tim Hahn; Chantal Henry; Derrek P Hibar; Josselin Houenou; Fleur M Howells; Neda Jahanshad; Tobias Kaufmann; Joanne Kenney; Tilo T J Kircher; Axel Krug; Trine V Lagerberg; Rhoshel K Lenroot; Carlos López-Jaramillo; Rodrigo Machado-Vieira; Ulrik F Malt; Colm McDonald; Philip B Mitchell; Benson Mwangi; Leila Nabulsi; Nils Opel; Bronwyn J Overs; Julian A Pineda-Zapata; Edith Pomarol-Clotet; Ronny Redlich; Gloria Roberts; Pedro G Rosa; Raymond Salvador; Theodore D Satterthwaite; Jair C Soares; Dan J Stein; Henk S Temmingh; Thomas Trappenberg; Anne Uhlmann; Neeltje E M van Haren; Eduard Vieta; Lars T Westlye; Daniel H Wolf; Dilara Yüksel; Marcus V Zanetti; Ole A Andreassen; Paul M Thompson; Tomas Hajek
Journal:  Mol Psychiatry       Date:  2018-08-31       Impact factor: 15.992

8.  Distributed deep learning networks among institutions for medical imaging.

Authors:  Ken Chang; Niranjan Balachandar; Carson Lam; Darvin Yi; James Brown; Andrew Beers; Bruce Rosen; Daniel L Rubin; Jayashree Kalpathy-Cramer
Journal:  J Am Med Inform Assoc       Date:  2018-08-01       Impact factor: 7.942

9.  From models to tools: clinical translation of machine learning studies in psychosis.

Authors:  Andrea Mechelli; Sandra Vieira
Journal:  NPJ Schizophr       Date:  2020-02-14

10.  Staging and quantification of florbetaben PET images using machine learning: impact of predicted regional cortical tracer uptake and amyloid stage on clinical outcomes.

Authors:  Jun Pyo Kim; Jeonghun Kim; Yeshin Kim; Seung Hwan Moon; Yu Hyun Park; Sole Yoo; Hyemin Jang; Hee Jin Kim; Duk L Na; Sang Won Seo; Joon-Kyung Seong
Journal:  Eur J Nucl Med Mol Imaging       Date:  2019-12-28       Impact factor: 9.236

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