| Literature DB >> 28426778 |
Agnieszka Kempinska-Podhorodecka1, Malgorzata Milkiewicz1, Dariusz Jabłonski2, Piotr Milkiewicz3, Ewa Wunsch4.
Abstract
BACKGROUND: Polymorphisms of vitamin D receptor (VDR) contribute to the pathogenesis of multiple autoimmune conditions.Entities:
Mesh:
Substances:
Year: 2017 PMID: 28426778 PMCID: PMC5398696 DOI: 10.1371/journal.pone.0176264
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic data of analysed subjects.
| Feature | PSC | Control group |
|---|---|---|
| 55 (28–90) | 27.8 (18–66) | |
| 182/93 | 344/32 | |
| 13.2 (6.6–53.9) | N/A | |
| 92 (17–1628) | N/A | |
| 130 (16–1411) | N/A | |
| 354 (33–2061) | N/A | |
| 332.5 (24–3102) | N/A | |
| 1.3 (0.2–27) | N/A | |
| 209 (72–871) | N/A | |
| 79 (29–489) | N/A |
AST: Aspartate aminotransferase; ALT: Alanine aminotransferase; ALP: Alkaline Phosphatase; GGT: Gamma-glutamyl transferase; N/A—Not Applicable
Genotype counts for VDR polymorphisms (rs1544410, rs7975232, rs731236) in PSC patients and in controls.
| Genotype | PSC (%) | Controls (%) | |||
|---|---|---|---|---|---|
| 40 (14.5%) | 44 (11.7%) | 1.14 | 1.28 (0.8–2.0) | ||
| 121 (44.0%) | 160 (42.6.2%) | 0.1 | 1.06 (0.8–1.5) | ||
| 114 (41.5%) | 172 (45.7%) | 1.2 | 0.8 (0.6–1.2) | ||
| 67 (24.4%) | 74 (19.7%) | 2.1 | 1.3 (0.9–1.9) | ||
| 124 (45.1%) | 196 (52.1%) | 3.1 | 0.7 (0.6–1.03) | ||
| 84 (30.5%) | 106 (28.2%) | 0.4 | 1.1 (0.8–1.6) | ||
| 116 (42.2%) | 172 (45.7%) | 0.6 | 0.9 (0.6–1.2) | ||
| 124 (45.1%) | 160 (42.6%) | 0.4 | 1.1 (0.8–1.5) | ||
| 35 (12.7%) | 44 (11.7%) | 0.2 | 1.1 (0.7–1.8) | ||
* Fisher`s exact probability test; Chi-squared test for categorical variables
PSC: Primary Sclerosing Cholangitis; OR: odds ratio; CI: confidence interval.
Allele association for VDR in patients with PSC and control subjects.
| SNP | Allele | PSC | Controls | OR (95%CI) | ||
|---|---|---|---|---|---|---|
| A/G [ | 201 (36.5%)/349 (63.5%) | 248 (33%)/504 (67%) | 1.8 | 1.2 (0.9–1.4) | ||
| A/C [ | 258 (46.9%)/292 (53.1%) | 344 (45.7%)/408 (44.3%) | 6.9 | 1.1 (0.8–1.3) | ||
| C/T [t/T] | 194 (35.3%)/356 (64.7%) | 248 (33%)/504 (67%) | 0.7 | 1.1 (0.9–1.4) |
* Fisher`s exact probability test;
PSC: Primary Sclerosing Cholangitis; OR: odds ratio; CI: confidence interval.
Allelic analysis of rs1544410, rs7975232 and rs731236 in relation to SF-36, PBC-40 and PBC-27 domains.
| 85.2±4.2 | 81.2±1.9 | 87.7±3.1 | 80.7±2.1 | 79.0±2.9 | 85.2±2,2 | ||||
| 73.0±7.2 | 61.8±3.5 | 77.0±5.7 | 59.4±3.7 | 57.2±5.0 | 68.8±4.0 | ||||
| 73.4±5.6 | 72.9±2.5 | 80.2±4.2 | 70.7±2.6 | 70.5±3.7 | 74.9±2.9 | ||||
| 50.3±5.8 | 48.0±1.8 | 53.5±4.0 | 46.7±1.9 | 46.8±2.5 | 49.6±2.5 | ||||
| 54.7±4.6 | 54.6±1.7 | 58.7±3.5 | 53.4±1.7 | 53.1±2.4 | 55.9±2.1 | ||||
| 68.7±5.2 | 64.6±2.0 | 72.1±3.9 | 63.1±2.2 | 61.8±2.9 | 68.0±2.6 | ||||
| 83.5±6.9 | 72.3±3.2 | 87.1±5.1 | 69.8±3.1 | 67.8±4.4 | 78.9±3.8 | ||||
| 68.6±3.8 | 64.9±1.7 | 69.3±3.1 | 64.3±1.7 | 62.2±2.4 | 68.2±1.9 | ||||
| 67.9±4.6 | 64.9±1.8 | 73.2±3.5 | 62.9±1.9 | 62.6±2.6 | 67.5±2.3 | ||||
| 65.9±4.3 | 61.5±1.8 | 71.3±3.3 | 59.3±1.9 | 58.6±2.5 | 65.0±2.2 | ||||
| 13.7±0.8 | 12.6±0.4 | 12.5±0.7 | 12.9±0.4 | 12.8±0.5 | 12.7±0.5 | ||||
| 3.8±0.6 | 4.7±0.3 | 3.5±0.5 | 5.0±0.4 | 5.1±0.5 | 4.3±0.4 | ||||
| 22.0±1.6 | 24.5±0.8 | 21.1±1.3 | 25.1±0.9 | 24.8±1.1 | 23.5±1.0 | ||||
| 10.1±0.8 | 10.9±0.4 | 9.3±0.6 | 11.2±0.4 | 10.9±0.5 | 10.5±0.5 | ||||
| 27.0±2.1 | 29.8±0.8 | 26.4±1.5 | 30.3±0.9 | 30.7±1.1 | 28.2±1.0 | ||||
| 6.4±0.5 | 6.2±0.2 | 6.0±0.4 | 6.3±0.2 | 6.4±0.3 | 6.1±0.2 | ||||
| 3.9±0.3 | 3.9±0.1 | 3.6±0.2 | 4.1±0.1 | 4.1±0.2 | 3.9±0.1 | ||||
| 3.8±0.6 | 4.7±0.3 | 3.4±0.5 | 5.0±0.3 | 5.0±0.5 | 4.2±0.3 | ||||
| 16.6±1.1 | 18.6±0.6 | 16.0±0.9 | 19.0±0.6 | 19.1±0.8 | 17.6±0.7 | ||||
| 8.3±0.6 | 9.1±0.4 | 7.7±0.5 | 9.4±0.4 | 9.2±0.5 | 8.8±0.4 | ||||
| 6.4±0.5 | 6.7±0.2 | 6.0±0.4 | 6.8±0.3 | 6.8±0.3 | 6.6±0.3 | ||||
| 6.2±0.7 | 6.9±0.2 | 5.9±0.5 | 7.1±0.3 | 7.2±0.3 | 6.5±0.4 | ||||
* ANOVA with Fisher's protected least significant difference (PLSD); NS: not significant.
Relationship between the rs7975232 VDR polymorphisms and features of the SF-36, PBC-40 and PBC-27 questionnaires.
| SF-36 | rs7975232 ( | |||||
|---|---|---|---|---|---|---|
| AA [ | AC [ | CC [ | ||||
| 87.7±3.6 | 81.1±2.7 | 80.2±3.5 | ||||
| 77.0±5.8 | 56.0±4.9 | 64.3±5.7 | ||||
| 80.2±4.2 | 69.3±3.5 | 72.7±4.1 | ||||
| 53.6±4.0 | 47.6±2.5 | 45.4±3.3 | ||||
| 58.7±3.5 | 52.9±2.1 | 54.0±3.0 | ||||
| 72.1±3.9 | 62.7±3.0 | 63.6±3.4 | ||||
| 87.1±5.1 | 71.3±4.5 | 67.7±5.0 | ||||
| 69.3±3.1 | 66.1±2.2 | 61.7±3.0 | ||||
| 73.2±3.5 | 62.2±2.5 | 63.9±3.1 | ||||
| 71.3±3.3 | 59.5±2.4 | 59.3±3.1 | ||||
| 12.5±0.7 | 12.8±0.5 | 13.0±0.7 | ||||
| 3.4±0.5 | 5.1±0.5 | 4.8±0.6 | ||||
| 21.1±1.2 | 25.3±1.1 | 24.8±1.5 | ||||
| 9.3±0.6 | 11.2±06 | 11.1±07 | ||||
| 26.3±1.5 | 30.4±1.2 | 30.2±1.4 | ||||
| 6.0±04 | 6.3±0.3 | 6.3±0.4 | ||||
| 3.6±0.2 | 4.0±0.2 | 4.2±0.3 | ||||
| 3.5±0.5 | 5.1±0.5 | 4.8±0.6 | ||||
| 16.0±0.9 | 18.9±0.8 | 19.1±1.1 | ||||
| 7.7±0.5 | 9.4±0.5 | 9.3±0.6 | ||||
| 6.0±0.4 | 7.0±0.3 | 6.7±0.4 | ||||
| 6.0±0.5 | 7.3±0.4 | 6.9±0.4 | ||||
*Fisher's. PLSD; NS: not significant.