| Literature DB >> 28423702 |
Alan H Bryce1,2,3, Jan B Egan3, Mitesh J Borad1,2,3, A Keith Stewart1,2,3, Grzegorz S Nowakowski3,4, Asher Chanan-Khan3,5, Mrinal M Patnaik3,4, Stephen M Ansell3,4, Michaela S Banck3,6, Steven I Robinson3,6, Aaron S Mansfield3,6, Eric W Klee3,7, Gavin R Oliver3,7, Jennifer B McCormick7, Norine E Huneke3, Colleen M Tagtow3, Robert B Jenkins8, Kandelaria M Rumilla8, Sarah E Kerr9, Jean-Pierre A Kocher3,7, Scott A Beck3, Martin E Fernandez-Zapico10, Gianrico Farrugia3,11, Konstantinos N Lazaridis3,11, Robert R McWilliams3,6,12.
Abstract
BACKGROUND: The ability to analyze the genomics of malignancies has opened up new possibilities for off-label targeted therapy in cancers that are refractory to standard therapy. At Mayo Clinic these efforts are organized through the Center for Individualized Medicine (CIM).Entities:
Keywords: cancer genomics; genomic tumor board; precision medicine; targeted therapeutics
Mesh:
Substances:
Year: 2017 PMID: 28423702 PMCID: PMC5432324 DOI: 10.18632/oncotarget.16057
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Patient demographics
| Age range (median) | 1.5 – 86 (53) |
| Gender male, % ( | 53% (88) |
| Gynecologic | 21 (22%) |
| Gastrointestinal | 15 (16%) |
| Breast | 13 (14%) |
| Pancreas/biliary | 13 (14%) |
| Brain | 8 (8%) |
| Renal | 4 (4%) |
| Lung/Thoracic | 4 (4%) |
| Sarcoma | 4 (4%) |
| Carcinoma unknown primary | 3 (3%) |
| Hepatic | 3 (3%) |
| Urothelial/bladder | 3 (3%) |
| Adrenal | 2 (2%) |
| Head/neck | 1 (1%) |
| Prostate | 1 (1%) |
| Acute Leukemia | 25 (36%) |
| Lymphoma | 24 (34%) |
| Chronic myeloproliferative/myelodysplastic neoplasms | 15 (21%) |
| Myeloma | 6 (9%) |
Figure 1CONSORT Diagram
Figure 2Testing Ordered
(A) Summary of tests ordered. (B) Reasons testing not completed (N = 24). IMC = Individualizing Medicine Clinic, *Insufficient tumor, no viable tissue or tissue unavailable.
Summary of actionable and informative results
| Testing completed | |
|---|---|
| Actionable | 92 (65%) |
| Not actionable or informative | 35 (25%) |
| Informative | 11 (8%) |
| No reportable results | 2 (1%) |
| Test failed | 1 (< 1%) |
Figure 3Functional pathways with therapeutically targetable actionable mutations identified by GTB
Treatment and clinical results for cases with actionable results
| Treatment result of genomic testing (N = 29) | N (%) | |
|---|---|---|
| Clinical response | 13 (45%) | |
| No clinical response | 12 (41%) | |
| Treated elsewhere - unknown response | 2 (7%) | |
| Passed away prior to response evaluation | 1 (3%) | |
| Response evaluation not completed yet | 1 (3%) | |
| Response evaluation not completed yet | 1 (50%) | |
| Clinical response | 1 (50%) | |
| Continued standard of care* | 14 (67%) | |
| Enrolled in clinical trial | 3 (14%) | |
| Treated elsewhere | 3 (14%) | |
| Unable to tolerate recommended drug | 1 (5%) | |
| Comfort measures/death near return of results | 22 (65%) | |
| Observation | 6 (18%) | |
| Unable to obtain drug | 2 (6%) | |
| Insurance denied | 2 (6%) | |
| Patient declined | 1 (3%) | |
| Trials not local | 1 (3%) | |
SOC = Standard of Care.
*Standard of care options not exhausted at time of genomic testing.
Patients receiving genomically targeted therapy
| Cancer | Actionable target | Drug | Clinical Benefit | |
|---|---|---|---|---|
| Complete and partial responses, | Diffuse large B cell lymphoma | CARD11 T367M | Ibrutunib & lenolidamide | CR |
| Metastatic NSCLC | EGFR amp, T790M | Cetuximab & afatinib | CR | |
| Bladder urothelial carcinoma | ERBB2 amp | HP | CR 8 mo+ | |
| Metastatic urethral adenocarcinoma | EGFR overexpression | Erlotinib | CR 6 mo+ | |
| Metastatic esophageal | EGFR amp | Cetuximab & 5-fluorouracil | PR | |
| Cholangiocarcinoma | RBPMS-NRG1, ERRFI1 codon deletion | HP, then erlotinib | PR 6 mo, SD 3 mo | |
| Cholangiocarcinoma | FGFR2-TACC3 fusion | Ponatinib | SD 4 mo | |
| Pancreatic | ERBB3 amp | Gemcitabine & erlotinib | SD 4 mo | |
| Ovary granulosa cell | AKT1 W80R | Temsirolimus, Ixabepilone | SD 4 mo+ | |
| Metastatic meningioma | BAP1 W52X | Vorinostat | SD 2 mo | |
| Metastatic duodenal cancer | ERBB2 A293T, S310Y, V777L | HP | SD 2 mo (deceased) | |
| Metastatic breast cancer | PIK3CA dup & E542K, AKT3 amp | Exemestane & everolimus | SD 1 mo | |
| T-cell large granular lymphocytic leukemia | STAT3 Y640F | Tofacitinib | SD x 12 mo | |
| Progressive disease, unable to assess response | Cholangiocarcinoma | PIK3CA G364R subclonal, TSC1 N891fs*13 | Everolimus | PD |
| Clonal eosinophilia | IDH1 R132G, DNMT3A V716I & splice site 2597+1G>A | AG-120 | PD | |
| Fibrolamellar hepatocellular carcinoma | FGFR4 copy number gain | Ponatinib | PD | |
| Lymphoma | BCL2 A2T, MYD88 L265P, PRDM1 splice site 291+2T>A, & ETV6 splice site 33+1G>A | Ibrutinib | PD | |
| Metastatic ampullary adenocarcinoma | BRAF K601E | Vemurafenib | PD | |
| Metastatic endometrial cancer | ALK rearrangement, ATM Y370X, BRCA2 C1200fs*1 | REFMAL355 | PD | |
| Metastatic ovarian cancer | SMO S33R | Vismodegib | PD | |
| Metastatic prostate cancer | BRAF G469A | Vemurafenib | PD | |
| Metastatic refractory colon cancer | ERBB2 amp | HP | PD | |
| Multiple myeloma | FLT4 P219T, IGH-MMSET, IGH-FGFR3 | Pazopanib | PD | |
| Ovarian cancer | BRCA1 copy number gain & S1389fs*1, PIK3CA amp | BMN-673 | PD | |
| Ovary Serous Carcinoma | PALB2 Y1183X | Veliparib | Mixed response/not tolerated | |
| T-cell acute lymphoblastic leukemia | PTEN C250fs*3, CHEK2 E351D, CDKN2A/B loss | Everolimus | PD | |
| Acute myelogenous leukemia | FLT3 D835V, MLL dup exons 2–10 | EPZ5676 | Passed away prior to response assessment | |
| Follicular lymphoma | IGH-BCL2 rearrangement | ABT-199 | Treated elsewhere* | |
| Multiple myeloma | NRAS Q61H | SAR650984 clinical trial | Treated elsewhere* | |
NSCLC = non-small cell lung cancer, Amp = amplification, dup = duplication, HP = trastuzumab & pertuzumab, CR = complete response, SD = stable disease, PR = partial response, PD = progressive disease, *follow-up data not available.