Literature DB >> 28408461

Whole-genome noncoding sequence analysis in T-cell acute lymphoblastic leukemia identifies oncogene enhancer mutations.

Shaoyan Hu1, Maoxiang Qian2, Hui Zhang2,3, Yu Guo4, Jin Yang1, Xujie Zhao2, Hailong He1, Jun Lu1, Jian Pan1, Meimei Chang4, Guoqing Du2, Ting-Nien Lin2, Shirley Kow-Yin Kham5, Thuan Chong Quah5,6, Hany Ariffin7, Ah-Moy Tan8, Yong Cheng9, Chunliang Li10, Allen Eng-Juh Yeoh5,6, Ching-Hon Pui11,12, Anders Jacobsen Skanderup4, Jun J Yang2,12.   

Abstract

Entities:  

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Year:  2017        PMID： 28408461      PMCID： PMC5472902          DOI： 10.1182/blood-2017-03-771162

Source DB:  PubMed          Journal:  Blood        ISSN： 0006-4971            Impact factor:   22.113


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  24 in total

1.  Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element.

Authors:  Marc R Mansour; Brian J Abraham; Lars Anders; Alla Berezovskaya; Alejandro Gutierrez; Adam D Durbin; Julia Etchin; Lee Lawton; Stephen E Sallan; Lewis B Silverman; Mignon L Loh; Stephen P Hunger; Takaomi Sanda; Richard A Young; A Thomas Look
Journal:  Science       Date:  2014-11-13       Impact factor: 47.728

2.  An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level.

Authors:  Daniel E Bauer; Sophia C Kamran; Samuel Lessard; Jian Xu; Yuko Fujiwara; Carrie Lin; Zhen Shao; Matthew C Canver; Elenoe C Smith; Luca Pinello; Peter J Sabo; Jeff Vierstra; Richard A Voit; Guo-Cheng Yuan; Matthew H Porteus; John A Stamatoyannopoulos; Guillaume Lettre; Stuart H Orkin
Journal:  Science       Date:  2013-10-11       Impact factor: 47.728

Review 3.  The genetics and mechanisms of T cell acute lymphoblastic leukaemia.

Authors:  Laura Belver; Adolfo Ferrando
Journal:  Nat Rev Cancer       Date:  2016-07-25       Impact factor: 60.716

Review 4.  Genomics in acute lymphoblastic leukaemia: insights and treatment implications.

Authors:  Kathryn G Roberts; Charles G Mullighan
Journal:  Nat Rev Clin Oncol       Date:  2015-03-17       Impact factor: 66.675

5.  FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.

Authors:  Melina Claussnitzer; Simon N Dankel; Kyoung-Han Kim; Gerald Quon; Wouter Meuleman; Christine Haugen; Viktoria Glunk; Isabel S Sousa; Jacqueline L Beaudry; Vijitha Puviindran; Nezar A Abdennur; Jannel Liu; Per-Arne Svensson; Yi-Hsiang Hsu; Daniel J Drucker; Gunnar Mellgren; Chi-Chung Hui; Hans Hauner; Manolis Kellis
Journal:  N Engl J Med       Date:  2015-08-19       Impact factor: 91.245

6.  Rearrangement of CRLF2 in B-progenitor- and Down syndrome-associated acute lymphoblastic leukemia.

Authors:  Charles G Mullighan; J Racquel Collins-Underwood; Letha A A Phillips; Michael G Loudin; Wei Liu; Jinghui Zhang; Jing Ma; Elaine Coustan-Smith; Richard C Harvey; Cheryl L Willman; Fady M Mikhail; Julia Meyer; Andrew J Carroll; Richard T Williams; Jinjun Cheng; Nyla A Heerema; Giuseppe Basso; Andrea Pession; Ching-Hon Pui; Susana C Raimondi; Stephen P Hunger; James R Downing; William L Carroll; Karen R Rabin
Journal:  Nat Genet       Date:  2009-10-18       Impact factor: 38.330

Review 7.  Childhood Acute Lymphoblastic Leukemia: Progress Through Collaboration.

Authors:  Ching-Hon Pui; Jun J Yang; Stephen P Hunger; Rob Pieters; Martin Schrappe; Andrea Biondi; Ajay Vora; André Baruchel; Lewis B Silverman; Kjeld Schmiegelow; Gabriele Escherich; Keizo Horibe; Yves C M Benoit; Shai Izraeli; Allen Eng Juh Yeoh; Der-Cherng Liang; James R Downing; William E Evans; Mary V Relling; Charles G Mullighan
Journal:  J Clin Oncol       Date:  2015-08-24       Impact factor: 44.544

8.  Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.

Authors:  Xiaoying Fan; Xiannian Zhang; Xinglong Wu; Hongshan Guo; Yuqiong Hu; Fuchou Tang; Yanyi Huang
Journal:  Genome Biol       Date:  2015-07-23       Impact factor: 13.583

9.  SCL, LMO1 and Notch1 reprogram thymocytes into self-renewing cells.

Authors:  Bastien Gerby; Cedric S Tremblay; Mathieu Tremblay; Shanti Rojas-Sutterlin; Sabine Herblot; Josée Hébert; Guy Sauvageau; Sébastien Lemieux; Eric Lécuyer; Diogo F T Veiga; Trang Hoang
Journal:  PLoS Genet       Date:  2014-12-18       Impact factor: 5.917

10.  Site- and allele-specific polycomb dysregulation in T-cell leukaemia.

Authors:  Jean-Marc Navarro; Aurore Touzart; Lydie C Pradel; Marie Loosveld; Myriam Koubi; Romain Fenouil; Sandrine Le Noir; Muhammad Ahmad Maqbool; Ester Morgado; Claude Gregoire; Sebastien Jaeger; Emilie Mamessier; Charles Pignon; Salima Hacein-Bey-Abina; Bernard Malissen; Marta Gut; Ivo G Gut; Hervé Dombret; Elizabeth A Macintyre; Steven J Howe; H Bobby Gaspar; Adrian J Thrasher; Norbert Ifrah; Dominique Payet-Bornet; Estelle Duprez; Jean-Christophe Andrau; Vahid Asnafi; Bertrand Nadel
Journal:  Nat Commun       Date:  2015-01-23       Impact factor: 14.919
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  12 in total

1.  Identification of fusion genes and characterization of transcriptome features in T-cell acute lymphoblastic leukemia.

Authors:  Bing Chen; Lu Jiang; Meng-Ling Zhong; Jian-Feng Li; Ben-Shang Li; Li-Jun Peng; Yu-Ting Dai; Bo-Wen Cui; Tian-Qi Yan; Wei-Na Zhang; Xiang-Qin Weng; Yin-Yin Xie; Jing Lu; Rui-Bao Ren; Su-Ning Chen; Jian-Da Hu; De-Pei Wu; Zhu Chen; Jing-Yan Tang; Jin-Yan Huang; Jian-Qing Mi; Sai-Juan Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-26       Impact factor: 11.205

Review 2.  Enhancer reprogramming in tumor progression: a new route towards cancer cell plasticity.

Authors:  Luca Fagnocchi; Vittoria Poli; Alessio Zippo
Journal:  Cell Mol Life Sci       Date:  2018-04-24       Impact factor: 9.261

Review 3.  Non-coding driver mutations in human cancer.

Authors:  Kerryn Elliott; Erik Larsson
Journal:  Nat Rev Cancer       Date:  2021-07-06       Impact factor: 60.716

Review 4.  Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemia.

Authors:  Laura Belver; Robert Albero; Adolfo A Ferrando
Journal:  Trends Immunol       Date:  2021-04-12       Impact factor: 16.687

Review 5.  Noncoding RNA transcription at enhancers and genome folding in cancer.

Authors:  Takeshi Isoda; Tomohiro Morio; Masatoshi Takagi
Journal:  Cancer Sci       Date:  2019-07-10       Impact factor: 6.716

Review 6.  The role of noncoding mutations in blood cancers.

Authors:  Sunniyat Rahman; Marc R Mansour
Journal:  Dis Model Mech       Date:  2019-11-26       Impact factor: 5.758

7.  MutSpot: detection of non-coding mutation hotspots in cancer genomes.

Authors:  Yu Amanda Guo; Mei Mei Chang; Anders Jacobsen Skanderup
Journal:  NPJ Genom Med       Date:  2020-06-05       Impact factor: 8.617

8.  Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X.

Authors:  Yu Liu; Chunliang Li; Shuhong Shen; Xiaolong Chen; Karol Szlachta; Michael N Edmonson; Ying Shao; Xiaotu Ma; Judith Hyle; Shaela Wright; Bensheng Ju; Michael C Rusch; Yanling Liu; Benshang Li; Michael Macias; Liqing Tian; John Easton; Maoxiang Qian; Jun J Yang; Shaoyan Hu; A Thomas Look; Jinghui Zhang
Journal:  Nat Genet       Date:  2020-07-06       Impact factor: 38.330

Review 9.  Dynamic Interactions of Transcription Factors and Enhancer Reprogramming in Cancer Progression.

Authors:  Emily Zboril; Hannah Yoo; Lizhen Chen; Zhijie Liu
Journal:  Front Oncol       Date:  2021-09-20       Impact factor: 6.244

10.  A General Catalyst Based on Cobalt Core-Shell Nanoparticles for the Hydrogenation of N-Heteroarenes Including Pyridines.

Authors:  Kathiravan Murugesan; Vishwas G Chandrashekhar; Carsten Kreyenschulte; Matthias Beller; Rajenahally V Jagadeesh
Journal:  Angew Chem Int Ed Engl       Date:  2020-08-17       Impact factor: 16.823
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