Literature DB >> 34230647

Non-coding driver mutations in human cancer.

Kerryn Elliott1, Erik Larsson2.   

Abstract

Tumour formation involves random mutagenic events and positive evolutionary selection acting on a subset of such events, referred to as driver mutations. A decade of careful surveying of tumour DNA using exome-based analyses has revealed a multitude of protein-coding somatic driver mutations, some of which are clinically actionable. Today, a transition towards whole-genome analysis is well under way, technically enabling the discovery of potential driver mutations occurring outside protein-coding sequences. Mutations are abundant in this vast non-coding space, which is more than 50 times larger than the coding exome, but reliable identification of selection signals in non-coding DNA remains a challenge. In this Review, we discuss recent findings in the field, where the emerging landscape is one in which non-coding driver mutations appear to be relatively infrequent. Nevertheless, we highlight several notable discoveries. We consider possible reasons for the relative absence of non-coding driver events, as well as the difficulties associated with detecting signals of positive selection in non-coding DNA.
© 2021. Springer Nature Limited.

Entities:  

Year:  2021        PMID: 34230647     DOI: 10.1038/s41568-021-00371-z

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  101 in total

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Journal:  Science       Date:  2013-01-24       Impact factor: 47.728

5.  Highly recurrent TERT promoter mutations in human melanoma.

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Journal:  Science       Date:  2013-01-24       Impact factor: 47.728

6.  Activation of proto-oncogenes by disruption of chromosome neighborhoods.

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7.  Emerging landscape of oncogenic signatures across human cancers.

Authors:  Giovanni Ciriello; Martin L Miller; Bülent Arman Aksoy; Yasin Senbabaoglu; Nikolaus Schultz; Chris Sander
Journal:  Nat Genet       Date:  2013-10       Impact factor: 38.330

8.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

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Journal:  Nature       Date:  2020-02-05       Impact factor: 49.962

9.  Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma.

Authors:  Hiromichi Suzuki; Sachin A Kumar; Shimin Shuai; Ander Diaz-Navarro; Ana Gutierrez-Fernandez; Pasqualino De Antonellis; Florence M G Cavalli; Kyle Juraschka; Hamza Farooq; Ichiyo Shibahara; Maria C Vladoiu; Jiao Zhang; Namal Abeysundara; David Przelicki; Patryk Skowron; Nicole Gauer; Betty Luu; Craig Daniels; Xiaochong Wu; Antoine Forget; Ali Momin; Jun Wang; Weifan Dong; Seung-Ki Kim; Wieslawa A Grajkowska; Anne Jouvet; Michelle Fèvre-Montange; Maria Luisa Garrè; Amulya A Nageswara Rao; Caterina Giannini; Johan M Kros; Pim J French; Nada Jabado; Ho-Keung Ng; Wai Sang Poon; Charles G Eberhart; Ian F Pollack; James M Olson; William A Weiss; Toshihiro Kumabe; Enrique López-Aguilar; Boleslaw Lach; Maura Massimino; Erwin G Van Meir; Joshua B Rubin; Rajeev Vibhakar; Lola B Chambless; Noriyuki Kijima; Almos Klekner; László Bognár; Jennifer A Chan; Claudia C Faria; Jiannis Ragoussis; Stefan M Pfister; Anna Goldenberg; Robert J Wechsler-Reya; Swneke D Bailey; Livia Garzia; A Sorana Morrissy; Marco A Marra; Xi Huang; David Malkin; Olivier Ayrault; Vijay Ramaswamy; Xose S Puente; John A Calarco; Lincoln Stein; Michael D Taylor
Journal:  Nature       Date:  2019-10-09       Impact factor: 49.962

10.  Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer.

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  14 in total

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3.  Genome-wide analysis of somatic noncoding mutation patterns in cancer.

Authors:  Alex B Wang; Christian Fagre; Anran Tang; Felix Dietlein; Nicolle J M Besselink; Edwin Cuppen; Chunliang Li; Shamil R Sunyaev; James T Neal; Eliezer M Van Allen
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4.  CTCF puts a new twist on UV damage and repair in skin cancer.

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Review 5.  Oncogenomic Changes in Pancreatic Cancer and Their Detection in Stool.

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Review 6.  Biomolecular condensates in cancer biology.

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Review 7.  Androgen Receptor-Mediated Transcription in Prostate Cancer.

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9.  Conversion of a Non-Cancer-Selective Promoter into a Cancer-Selective Promoter.

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