Literature DB >> 28398354

Global genetic variation of select opiate metabolism genes in self-reported healthy individuals.

F R Wendt1, G Pathak1, A Sajantila2, R Chakraborty1, B Budowle1,3,4.   

Abstract

CYP2D6 is a key pharmacogene encoding an enzyme impacting poor, intermediate, extensive and ultrarapid phase I metabolism of many marketed drugs. The pharmacogenetics of opiate drug metabolism is particularly interesting due to the relatively high incidence of addiction and overdose. Recently, trans-acting opiate metabolism and analgesic response enzymes (UGT2B7, ABCB1, OPRM1 and COMT) have been incorporated into pharmacogenetic studies to generate more comprehensive metabolic profiles of patients. With use of massively parallel sequencing, it is possible to identify additional polymorphisms that fine tune, or redefine, previous pharmacogenetic findings, which typically rely on targeted approaches. The 1000 Genomes Project data were analyzed to describe population genetic variation and statistics for these five genes in self-reported healthy individuals in five global super- and 26 sub-populations. Findings on the variation of these genes in various populations expand baseline understanding of pharmacogenetically relevant polymorphisms for future studies of affected cohorts.

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Year:  2017        PMID: 28398354     DOI: 10.1038/tpj.2017.13

Source DB:  PubMed          Journal:  Pharmacogenomics J        ISSN: 1470-269X            Impact factor:   3.550


  53 in total

1.  Accounting for human polymorphisms predicted to affect protein function.

Authors:  Pauline C Ng; Steven Henikoff
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

Review 2.  Technology platforms for pharmacogenomic diagnostic assays.

Authors:  Walter H Koch
Journal:  Nat Rev Drug Discov       Date:  2004-09       Impact factor: 84.694

3.  Investigation of morphine and morphine glucuronide levels and cytochrome P450 isoenzyme 2D6 genotype in codeine-related deaths.

Authors:  Joachim Frost; Arne Helland; Ivar S Nordrum; Lars Slørdal
Journal:  Forensic Sci Int       Date:  2012-01-28       Impact factor: 2.395

4.  On the usage of HWE for identifying genotyping errors.

Authors:  Yik Y Teo; Andrew E Fry; Taane G Clark; E S Tai; Mark Seielstad
Journal:  Ann Hum Genet       Date:  2007-03-27       Impact factor: 1.670

5.  Genomic dissection of population substructure of Han Chinese and its implication in association studies.

Authors:  Shuhua Xu; Xianyong Yin; Shilin Li; Wenfei Jin; Haiyi Lou; Ling Yang; Xiaohong Gong; Hongyan Wang; Yiping Shen; Xuedong Pan; Yungang He; Yajun Yang; Yi Wang; Wenqing Fu; Yu An; Jiucun Wang; Jingze Tan; Ji Qian; Xiaoli Chen; Xin Zhang; Yangfei Sun; Xuejun Zhang; Bailin Wu; Li Jin
Journal:  Am J Hum Genet       Date:  2009-12       Impact factor: 11.025

Review 6.  Search for genetic markers and functional variants involved in the development of opiate and cocaine addiction and treatment.

Authors:  Vadim Yuferov; Orna Levran; Dmitri Proudnikov; David A Nielsen; Mary Jeanne Kreek
Journal:  Ann N Y Acad Sci       Date:  2010-02       Impact factor: 5.691

Review 7.  Genome-wide association studies in diverse populations.

Authors:  Noah A Rosenberg; Lucy Huang; Ethan M Jewett; Zachary A Szpiech; Ivana Jankovic; Michael Boehnke
Journal:  Nat Rev Genet       Date:  2010-05       Impact factor: 53.242

8.  Post-mortem Whole exome sequencing with gene-specific analysis for autopsy-negative sudden unexplained death in the young: a case series.

Authors:  Nupoor Narula; David J Tester; Anna Paulmichl; Joseph J Maleszewski; Michael J Ackerman
Journal:  Pediatr Cardiol       Date:  2014-12-13       Impact factor: 1.655

9.  Codeine-related deaths: The role of pharmacogenetics and drug interactions.

Authors:  Jessica Lam; Karen L Woodall; Patricia Solbeck; Colin J D Ross; Bruce C Carleton; Michael R Hayden; Gideon Koren; Parvaz Madadi
Journal:  Forensic Sci Int       Date:  2014-03-26       Impact factor: 2.395

10.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

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  3 in total

Review 1.  Increasing the reach of forensic genetics with massively parallel sequencing.

Authors:  Bruce Budowle; Sarah E Schmedes; Frank R Wendt
Journal:  Forensic Sci Med Pathol       Date:  2017-06-19       Impact factor: 2.007

2.  Variation in Actionable Pharmacogenetic Markers in Natives and Mestizos From Mexico.

Authors:  Vanessa Gonzalez-Covarrubias; Marlet Morales-Franco; Omar F Cruz-Correa; Angélica Martínez-Hernández; Humberto García-Ortíz; Francisco Barajas-Olmos; Alma Delia Genis-Mendoza; José Jaime Martínez-Magaña; Humberto Nicolini; Lorena Orozco; Xavier Soberón
Journal:  Front Pharmacol       Date:  2019-10-10       Impact factor: 5.810

Review 3.  Meta-analysis of probability estimates of worldwide variation of CYP2D6 and CYP2C19.

Authors:  Anne B Koopmans; Mario H Braakman; David J Vinkers; Hans W Hoek; Peter N van Harten
Journal:  Transl Psychiatry       Date:  2021-02-24       Impact factor: 6.222

  3 in total

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