Literature DB >> 2838807

Synthesis of decadeoxyribonucleotides containing 5-modified uracils and their interactions with restriction endonucleases Bgl II, Sau 3AI and Mbo I (nucleosides and nucleotides 82).

T Hayakawa1, A Ono, T Ueda.   

Abstract

Decadeoxyribonucleotides containing uracil, 5-bromouracil, 5-cyanouracil and 5-ethyluracil in recognition sequences of restriction endonucleases Bgl II, Sau 3AI, Mbo I were synthesized. Decanucleotides containing 5-bromouracil in place of thymine had essentially the same susceptibility to all the restriction endonucleases. Uracil-containing decanucleotides were however very resistant to attack. Decanucleotides containing 5-cyanouracil in the recognition sequence were strongly resistant to hydrolysis by Sau 3AI, but were hydrolysed by Bgl II and Mbo I as well as the parent decanucleotide. Decanucleotides containing 5-ethyluracil were strongly resistant to hydrolysis by Sau 3AI, but were partially resistant to hydrolysis by Bgl II and Mbo I.

Entities:  

Mesh:

Substances:

Year:  1988        PMID: 2838807      PMCID: PMC336694          DOI: 10.1093/nar/16.11.4761

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  A restriction endonuclease from Staphylococcus aureus.

Authors:  J S Sussenbach; C H Monfoort; R Schiphof; E E Stobberingh
Journal:  Nucleic Acids Res       Date:  1976-11       Impact factor: 16.971

2.  Restriction and modification of a self-complementary octanucleotide containing the EcoRI substrate.

Authors:  P H Greene; M S Poonian; A L Nussbaum; L Tobias; D E Garfin; H W Boyer; H M Goodman
Journal:  J Mol Biol       Date:  1975-12-05       Impact factor: 5.469

3.  Two sequence-specific endonucleases from Moraxella bovis.

Authors:  R E Gelinas; P A Myers; R J Roberts
Journal:  J Mol Biol       Date:  1977-07       Impact factor: 5.469

4.  Interaction of the restriction endonuclease ScaI with its substrates.

Authors:  K Kita; N Hiraoka; F Kimizuka; A Obayashi; H Kojima; H Takahashi; H Saito
Journal:  Nucleic Acids Res       Date:  1985-10-11       Impact factor: 16.971

5.  Role of thymidine residues in DNA recognition by the EcoRI and EcoRV restriction endonucleases.

Authors:  A Fliess; H Wolfes; A Rosenthal; K Schwellnus; H Blöcker; R Frank; A Pingoud
Journal:  Nucleic Acids Res       Date:  1986-04-25       Impact factor: 16.971

6.  "Aromatic" substituent constants for structure-activity correlations.

Authors:  C Hansch; A Leo; S H Unger; K H Kim; D Nikaitani; E J Lien
Journal:  J Med Chem       Date:  1973-11       Impact factor: 7.446

7.  Minor-groove-modified oligonucleotides: synthesis of decadeoxynucleotides containing hypoxanthine, N2-methylguanine and 3-deazaadenine, and their interactions with restriction endonucleases Bgl II, Sau, 3AI, and Mbo I (Nucleosides and Nucleotides Part 75).

Authors:  A Ono; T Ueda
Journal:  Nucleic Acids Res       Date:  1987-04-10       Impact factor: 16.971

8.  DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping.

Authors:  E Jay; R Bambara; R Padmanabhan; R Wu
Journal:  Nucleic Acids Res       Date:  1974-03       Impact factor: 16.971

9.  EcoRI cleavage and methylation of DNAs containing modified pyrimidines in the recogintion sequence.

Authors:  K L Berkner; W R Folk
Journal:  J Biol Chem       Date:  1977-05-25       Impact factor: 5.157

10.  Use of DNA polymerase I primed by a synthetic oligonucleotide to determine a nucleotide sequence in phage fl DNA.

Authors:  F Sanger; J E Donelson; A R Coulson; H Kössel; D Fischer
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

View more
  6 in total

1.  Analysis of the recognition mechanism involved in the EcoRV catalyzed cleavage of DNA using modified oligodeoxynucleotides.

Authors:  A Fliess; H Wolfes; F Seela; A Pingoud
Journal:  Nucleic Acids Res       Date:  1988-12-23       Impact factor: 16.971

2.  Synthesis and properties of small interfering RNA duplexes carrying 5-ethyluridine residues.

Authors:  Montserrat Terrazas; Ramon Eritja
Journal:  Mol Divers       Date:  2010-11-16       Impact factor: 2.943

3.  Dam methylase from Escherichia coli: kinetic studies using modified DNA oligomers: hemimethylated substrates.

Authors:  S Marzabal; S DuBois; V Thielking; A Cano; R Eritja; W Guschlbauer
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

4.  Vibrational stark effect probes for nucleic acids.

Authors:  Lisa N Silverman; Michael E Pitzer; Peter O Ankomah; Steven G Boxer; Edward E Fenlon
Journal:  J Phys Chem B       Date:  2007-09-18       Impact factor: 2.991

5.  Investigation of some properties of oligodeoxynucleotides containing 4'-thio-2'-deoxynucleotides: duplex hybridization and nuclease sensitivity.

Authors:  G D Jones; E A Lesnik; S R Owens; L M Risen; R T Walker
Journal:  Nucleic Acids Res       Date:  1996-11-01       Impact factor: 16.971

6.  A comparative study of the thermal stability of oligodeoxyribonucleotides containing 5-substituted 2'-deoxyuridines.

Authors:  M Ahmadian; P Zhang; D E Bergstrom
Journal:  Nucleic Acids Res       Date:  1998-07-01       Impact factor: 16.971

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.