Literature DB >> 28386206

High-Throughput, Automated Image Processing for Large-Scale Fluorescence Microscopy Experiments.

Allen Goodman1, Anne E Carpenter1.   

Abstract

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Year:  2016        PMID: 28386206      PMCID: PMC5380232          DOI: 10.1017/S1431927616003548

Source DB:  PubMed          Journal:  Microsc Microanal        ISSN: 1431-9276            Impact factor:   4.127


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  9 in total

1.  Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning.

Authors:  Thouis R Jones; Anne E Carpenter; Michael R Lamprecht; Jason Moffat; Serena J Silver; Jennifer K Grenier; Adam B Castoreno; Ulrike S Eggert; David E Root; Polina Golland; David M Sabatini
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-02       Impact factor: 11.205

2.  ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state.

Authors:  Yakov Chudnovsky; Dohoon Kim; Siyuan Zheng; Warren A Whyte; Mukesh Bansal; Mark-Anthony Bray; Shuba Gopal; Matthew A Theisen; Steve Bilodeau; Prathapan Thiru; Julien Muffat; Omer H Yilmaz; Maya Mitalipova; Kevin Woolard; Jeongwu Lee; Riko Nishimura; Nobuo Sakata; Howard A Fine; Anne E Carpenter; Serena J Silver; Roel G W Verhaak; Andrea Califano; Richard A Young; Keith L Ligon; Ingo K Mellinghoff; David E Root; David M Sabatini; William C Hahn; Milan G Chheda
Journal:  Cell Rep       Date:  2014-01-16       Impact factor: 9.423

3.  A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells.

Authors:  Amber L Jolly; Chi-Hao Luan; Brendon E Dusel; Sara F Dunne; Michael Winding; Vishrut J Dixit; Chloe Robins; Jennifer L Saluk; David J Logan; Anne E Carpenter; Manu Sharma; Deborah Dean; Andrew R Cohen; Vladimir I Gelfand
Journal:  Cell Rep       Date:  2016-01-07       Impact factor: 9.423

4.  Identification of regulators of polyploidization presents therapeutic targets for treatment of AMKL.

Authors:  Qiang Wen; Benjamin Goldenson; Serena J Silver; Monica Schenone; Vlado Dancik; Zan Huang; Ling-Zhi Wang; Timothy A Lewis; W Frank An; Xiaoyu Li; Mark-Anthony Bray; Clarisse Thiollier; Lauren Diebold; Laure Gilles; Martha S Vokes; Christopher B Moore; Meghan Bliss-Moreau; Lynn Verplank; Nicola J Tolliday; Rama Mishra; Sasidhar Vemula; Jianjian Shi; Lei Wei; Reuben Kapur; Cécile K Lopez; Bastien Gerby; Paola Ballerini; Francoise Pflumio; D Gary Gilliland; Liat Goldberg; Yehudit Birger; Shai Izraeli; Alan S Gamis; Franklin O Smith; William G Woods; Jeffrey Taub; Christina A Scherer; James E Bradner; Boon-Cher Goh; Thomas Mercher; Anne E Carpenter; Robert J Gould; Paul A Clemons; Steven A Carr; David E Root; Stuart L Schreiber; Andrew M Stern; John D Crispino
Journal:  Cell       Date:  2012-08-03       Impact factor: 41.582

5.  Niche-based screening identifies small-molecule inhibitors of leukemia stem cells.

Authors:  Kimberly A Hartwell; Peter G Miller; Siddhartha Mukherjee; Alissa R Kahn; Alison L Stewart; David J Logan; Joseph M Negri; Mildred Duvet; Marcus Järås; Rishi Puram; Vlado Dancik; Fatima Al-Shahrour; Thomas Kindler; Zuzana Tothova; Shrikanta Chattopadhyay; Thomas Hasaka; Rajiv Narayan; Mingji Dai; Christina Huang; Sebastian Shterental; Lisa P Chu; J Erika Haydu; Jae Hung Shieh; David P Steensma; Benito Munoz; Joshua A Bittker; Alykhan F Shamji; Paul A Clemons; Nicola J Tolliday; Anne E Carpenter; D Gary Gilliland; Andrew M Stern; Malcolm A S Moore; David T Scadden; Stuart L Schreiber; Benjamin L Ebert; Todd R Golub
Journal:  Nat Chem Biol       Date:  2013-10-27       Impact factor: 15.040

6.  The bromodomain protein Brd4 insulates chromatin from DNA damage signalling.

Authors:  Scott R Floyd; Michael E Pacold; Qiuying Huang; Scott M Clarke; Fred C Lam; Ian G Cannell; Bryan D Bryson; Jonathan Rameseder; Michael J Lee; Emily J Blake; Anna Fydrych; Richard Ho; Benjamin A Greenberger; Grace C Chen; Amanda Maffa; Amanda M Del Rosario; David E Root; Anne E Carpenter; William C Hahn; David M Sabatini; Clark C Chen; Forest M White; James E Bradner; Michael B Yaffe
Journal:  Nature       Date:  2013-06-02       Impact factor: 49.962

7.  High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons.

Authors:  Thomas J F Nieland; David J Logan; Jessica Saulnier; Daniel Lam; Caroline Johnson; David E Root; Anne E Carpenter; Bernardo L Sabatini
Journal:  PLoS One       Date:  2014-03-14       Impact factor: 3.240

8.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

9.  Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth.

Authors:  Sarah A Stanley; Amy K Barczak; Melanie R Silvis; Samantha S Luo; Kimberly Sogi; Martha Vokes; Mark-Anthony Bray; Anne E Carpenter; Christopher B Moore; Noman Siddiqi; Eric J Rubin; Deborah T Hung
Journal:  PLoS Pathog       Date:  2014-02-20       Impact factor: 6.823

  9 in total
  2 in total

1.  Interpretable deep learning uncovers cellular properties in label-free live cell images that are predictive of highly metastatic melanoma.

Authors:  Assaf Zaritsky; Andrew R Jamieson; Erik S Welf; Andres Nevarez; Justin Cillay; Ugur Eskiocak; Brandi L Cantarel; Gaudenz Danuser
Journal:  Cell Syst       Date:  2021-06-01       Impact factor: 11.091

2.  New software for automated cilia detection in cells (ACDC).

Authors:  Max C Lauring; Tianqi Zhu; Wei Luo; Wenqi Wu; Feng Yu; Derek Toomre
Journal:  Cilia       Date:  2019-08-01
  2 in total

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