Literature DB >> 28385959

CRISPR-Cas: Adapting to change.

Simon A Jackson1, Rebecca E McKenzie2, Robert D Fagerlund1, Sebastian N Kieper2, Peter C Fineran3,4, Stan J J Brouns5,6.   

Abstract

Bacteria and archaea are engaged in a constant arms race to defend against the ever-present threats of viruses and invasion by mobile genetic elements. The most flexible weapons in the prokaryotic defense arsenal are the CRISPR-Cas adaptive immune systems. These systems are capable of selective identification and neutralization of foreign DNA and/or RNA. CRISPR-Cas systems rely on stored genetic memories to facilitate target recognition. Thus, to keep pace with a changing pool of hostile invaders, the CRISPR memory banks must be regularly updated with new information through a process termed CRISPR adaptation. In this Review, we outline the recent advances in our understanding of the molecular mechanisms governing CRISPR adaptation. Specifically, the conserved protein machinery Cas1-Cas2 is the cornerstone of adaptive immunity in a range of diverse CRISPR-Cas systems.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28385959     DOI: 10.1126/science.aal5056

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  130 in total

1.  Cas4 Nucleases Define the PAM, Length, and Orientation of DNA Fragments Integrated at CRISPR Loci.

Authors:  Masami Shiimori; Sandra C Garrett; Brenton R Graveley; Michael P Terns
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

2.  Spermidine strongly increases the fidelity of Escherichia coli CRISPR Cas1-Cas2 integrase.

Authors:  Pierre Plateau; Clara Moch; Sylvain Blanquet
Journal:  J Biol Chem       Date:  2019-06-06       Impact factor: 5.157

3.  Different genetic and morphological outcomes for phages targeted by single or multiple CRISPR-Cas spacers.

Authors:  B N J Watson; R A Easingwood; B Tong; M Wolf; G P C Salmond; R H J Staals; M Bostina; P C Fineran
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

4.  The ecology and evolution of microbial CRISPR-Cas adaptive immune systems.

Authors:  Edze R Westra; Stineke van Houte; Sylvain Gandon; Rachel Whitaker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

5.  CRISPR evolution and bacteriophage persistence in the context of population bottlenecks.

Authors:  Jack Common; Edze R Westra
Journal:  RNA Biol       Date:  2019-02-17       Impact factor: 4.652

6.  Spacer capture and integration by a type I-F Cas1-Cas2-3 CRISPR adaptation complex.

Authors:  Robert D Fagerlund; Max E Wilkinson; Oleg Klykov; Arjan Barendregt; F Grant Pearce; Sebastian N Kieper; Howard W R Maxwell; Angela Capolupo; Albert J R Heck; Kurt L Krause; Mihnea Bostina; Richard A Scheltema; Raymond H J Staals; Peter C Fineran
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-13       Impact factor: 11.205

7.  Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis.

Authors:  Sergey A Shmakov; Kira S Makarova; Yuri I Wolf; Konstantin V Severinov; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

8.  A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding.

Authors:  Wenyuan Han; Stefano Stella; Yan Zhang; Tong Guo; Karolina Sulek; Li Peng-Lundgren; Guillermo Montoya; Qunxin She
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

9.  Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense.

Authors:  Kira S Makarova; Albertas Timinskas; Yuri I Wolf; Ayal B Gussow; Virginijus Siksnys; Česlovas Venclovas; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2020-09-18       Impact factor: 16.971

10.  PAM recognition by miniature CRISPR-Cas12f nucleases triggers programmable double-stranded DNA target cleavage.

Authors:  Tautvydas Karvelis; Greta Bigelyte; Joshua K Young; Zhenglin Hou; Rimante Zedaveinyte; Karolina Budre; Sushmitha Paulraj; Vesna Djukanovic; Stephen Gasior; Arunas Silanskas; Česlovas Venclovas; Virginijus Siksnys
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

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