Literature DB >> 28378567

Insights into the microbial diversity and community dynamics of Chinese traditional fermented foods from using high-throughput sequencing approaches.

Guo-Qing He1,2, Tong-Jie Liu1,2, Faizan A Sadiq1,2, Jing-Si Gu1,2, Guo-Hua Zhang1,2.   

Abstract

Chinese traditional fermented foods have a very long history dating back thousands of years and have become an indispensable part of Chinese dietary culture. A plethora of research has been conducted to unravel the composition and dynamics of microbial consortia associated with Chinese traditional fermented foods using culture-dependent as well as culture-independent methods, like different high-throughput sequencing (HTS) techniques. These HTS techniques enable us to understand the relationship between a food product and its microbes to a greater extent than ever before. Considering the importance of Chinese traditional fermented products, the objective of this paper is to review the diversity and dynamics of microbiota in Chinese traditional fermented foods revealed by HTS approaches.

Keywords:  Chinese traditional fermented foods; Microbiota; High-throughput sequencing

Mesh:

Substances:

Year:  2017        PMID: 28378567      PMCID: PMC5394094          DOI: 10.1631/jzus.B1600148

Source DB:  PubMed          Journal:  J Zhejiang Univ Sci B        ISSN: 1673-1581            Impact factor:   3.066


  68 in total

Review 1.  Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products.

Authors:  T L Marsh
Journal:  Curr Opin Microbiol       Date:  1999-06       Impact factor: 7.934

Review 2.  DGGE/TGGE a method for identifying genes from natural ecosystems.

Authors:  G Muyzer
Journal:  Curr Opin Microbiol       Date:  1999-06       Impact factor: 7.934

3.  Botulism outbreak associated with eating fermented food--Alaska, 2001.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2001-08-17       Impact factor: 17.586

4.  Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment.

Authors:  T Kaeberlein; K Lewis; S S Epstein
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

Review 5.  The viable but nonculturable state in bacteria.

Authors:  James D Oliver
Journal:  J Microbiol       Date:  2005-02       Impact factor: 3.422

Review 6.  Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products.

Authors:  Gerrit Smit; Bart A Smit; Wim J M Engels
Journal:  FEMS Microbiol Rev       Date:  2005-08       Impact factor: 16.408

7.  The biodiversity of lactic acid bacteria in Greek traditional wheat sourdoughs is reflected in both composition and metabolite formation.

Authors:  Luc De Vuyst; Vincent Schrijvers; Spiros Paramithiotis; Bart Hoste; Marc Vancanneyt; Jean Swings; George Kalantzopoulos; Effie Tsakalidou; Winy Messens
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

Review 8.  Metagenomics: genomic analysis of microbial communities.

Authors:  Christian S Riesenfeld; Patrick D Schloss; Jo Handelsman
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

9.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

Review 10.  Exploring prokaryotic diversity in the genomic era.

Authors:  Philip Hugenholtz
Journal:  Genome Biol       Date:  2002-01-29       Impact factor: 13.583

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  2 in total

1.  Distinct bacterial community of a solid-state fermented Chinese traditional food huase sufu revealed by high-throughput sequencing.

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Journal:  Food Sci Biotechnol       Date:  2021-08-10       Impact factor: 3.231

Review 2.  Interaction and Application of Molds and Yeasts in Chinese Fermented Foods.

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Journal:  Front Microbiol       Date:  2022-04-08       Impact factor: 5.640

  2 in total

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