Literature DB >> 28369795

Sucrose sensing through nascent peptide-meditated ribosome stalling at the stop codon of Arabidopsis bZIP11 uORF2.

Yui Yamashita1, Seidai Takamatsu2, Michael Glasbrenner1, Thomas Becker1, Satoshi Naito2,3, Roland Beckmann1.   

Abstract

Arabidopsis bZIP11 is a transcription factor that modulates amino acid metabolism under high-sucrose conditions. Expression of bZIP11 is downregulated in a sucrose-dependent manner during translation. Previous in vivo studies have identified the second upstream open reading frame (uORF2) as an essential regulatory element for the sucrose-dependent translational repression of bZIP11. However, it remains unclear how uORF2 represses bZIP11 expression under high-sucrose conditions. Through biochemical experiments using cell-free translation systems, we report on sucrose-mediated ribosome stalling at the stop codon of uORF2. The C-terminal 10 amino acids (29-SFSVxFLxxLYYV-41) of uORF2 are important for ribosome stalling. Our results demonstrate that uORF2 encodes a regulatory nascent peptide that functions to sense intracellular sucrose abundance. This is the first biochemical identification of the intracellular sucrose sensor.
© 2017 Federation of European Biochemical Societies.

Entities:  

Keywords:  in vitro translation; nascent peptide; ribosome stalling; sucrose sensing; upstream ORF

Mesh:

Substances:

Year:  2017        PMID: 28369795     DOI: 10.1002/1873-3468.12634

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  18 in total

1.  Metabolite Control of Translation by Conserved Peptide uORFs: The Ribosome as a Metabolite Multisensor.

Authors:  Sjors van der Horst; Teodora Filipovska; Johannes Hanson; Sjef Smeekens
Journal:  Plant Physiol       Date:  2019-08-26       Impact factor: 8.340

Review 2.  Conserved Upstream Open Reading Frame Nascent Peptides That Control Translation.

Authors:  Thomas E Dever; Ivaylo P Ivanov; Matthew S Sachs
Journal:  Annu Rev Genet       Date:  2020-09-01       Impact factor: 16.830

3.  The Dynamic Kaleidoscope of RNA Biology in Plants.

Authors:  Julia Bailey-Serres; Jixian Zhai; Motoaki Seki
Journal:  Plant Physiol       Date:  2020-01       Impact factor: 8.340

Review 4.  Small open reading frames in plant research: from prediction to functional characterization.

Authors:  Sheue Ni Ong; Boon Chin Tan; Aisyafaznim Al-Idrus; Chee How Teo
Journal:  3 Biotech       Date:  2022-02-24       Impact factor: 2.406

5.  Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels.

Authors:  Yuta Hiragori; Hiro Takahashi; Taihei Karino; Atsushi Kaido; Noriya Hayashi; Shun Sasaki; Kodai Nakao; Taichiro Motomura; Yui Yamashita; Satoshi Naito; Hitoshi Onouchi
Journal:  Plant Mol Biol       Date:  2022-08-31       Impact factor: 4.335

6.  Boron-Dependent Translational Suppression of the Borate Exporter BOR1 Contributes to the Avoidance of Boron Toxicity.

Authors:  Izumi Aibara; Tatsuya Hirai; Koji Kasai; Junpei Takano; Hitoshi Onouchi; Satoshi Naito; Toru Fujiwara; Kyoko Miwa
Journal:  Plant Physiol       Date:  2018-05-04       Impact factor: 8.340

Review 7.  Translational gene regulation in plants: A green new deal.

Authors:  Ricardo A Urquidi Camacho; Ansul Lokdarshi; Albrecht G von Arnim
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-05-04       Impact factor: 9.349

8.  Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest.

Authors:  Noriya Hayashi; Shun Sasaki; Hiro Takahashi; Yui Yamashita; Satoshi Naito; Hitoshi Onouchi
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

9.  Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA.

Authors:  Hiro Takahashi; Noriya Hayashi; Yuta Hiragori; Shun Sasaki; Taichiro Motomura; Yui Yamashita; Satoshi Naito; Anna Takahashi; Kazuyuki Fuse; Kenji Satou; Toshinori Endo; Shoko Kojima; Hitoshi Onouchi
Journal:  BMC Genomics       Date:  2020-03-30       Impact factor: 3.969

Review 10.  The Sugar-Signaling Hub: Overview of Regulators and Interaction with the Hormonal and Metabolic Network.

Authors:  Soulaiman Sakr; Ming Wang; Fabienne Dédaldéchamp; Maria-Dolores Perez-Garcia; Laurent Ogé; Latifa Hamama; Rossitza Atanassova
Journal:  Int J Mol Sci       Date:  2018-08-24       Impact factor: 5.923

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