| Literature DB >> 28350786 |
David L Phelps1, Jane V Borley1, Kirsty J Flower1, Roberto Dina1, Silvia Darb-Esfahani2, Ioana Braicu3, Jalid Sehouli3, Christina Fotopoulou1,3, Charlotte S Wilhelm-Benartzi1, Hani Gabra1, Joseph Yazbek1, Jayanta Chatterjee1, Jacey Ip1, Harun Khan1, Marina-Therese Likos-Corbett1, Robert Brown1, Sadaf Ghaem-Maghami1.
Abstract
BACKGROUND: Survival benefit from surgical debulking of ovarian cancer (OC) is well established, but some women, despite total macroscopic clearance of disease, still have poor prognosis. We aimed to identify biomarkers to predict benefit from conventional surgery.Entities:
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Year: 2017 PMID: 28350786 PMCID: PMC5482730 DOI: 10.1038/bjc.2017.83
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Figure 1Surgical trends and survival according to debulk status in the Hammersmith Database between 2001 and 2014. (A) Debulk rates (percentage of all cases) at Hammersmith Hospital between 2001 and 2014. Total macroscopic debulk (0 mm RD) shown in black, optimal debulk (RD 1–10 mm) in red, and suboptimal debulk (RD>10 mm) in green. (B) Overall survival – total debulk vs suboptimal debulk (HR=1.25 (95% CI 1.06, 1.47)). (C) Progression-free survival – total debulk vs suboptimal debulk (HR=1.23 (95% CI 1.05, 1.43)). Multivariable Cox proportional hazards model adjusting for age, stage, grade, and histology.
Six most significant differentially methylated loci in Hammersmith discovery cohort using 27k methylation array associated with survival in patients with the least residual disease (optimal debulk n=39)
| cg14578030 | 85.2 | 0.011 | 0.39 | 0.19, 0.81 | |
| cg21856603 | 77.5 | 0.042 | 0.48 | 0.24, 0.98 | |
| cg16155702 | 74.3 | 0.031 | 0.50 | 0.26, 0.94 | |
| cg13247990 | 80.1 | 0.008 | 0.51 | 0.31, 0.84 | |
| cg19961522 | 73.2 | 0.024 | 0.57 | 0.35, 0.93 | |
| cg23370883 | 61.7 | 0.026 | 0.57 | 0.35, 0.94 |
Abbreviations: CI=confidence interval; FGF4=fibroblast growth factor 4; FGF21=fibroblast growth factor 21; HR=hazards ratio; ITGAE=integrin alpha E; MYLK2=myosin light chain kinase 2; MYLK3=myosin light chain kinase 3; MYL7=myosin light chain 7, regulatory.
P-value determined by Cox proportional hazards model adjusting for age, stage, chip, and residual disease status. Supplementary Table S3 lists the multivariable Cox proportional hazards survival analysis for the top 27 significant probes.
Figure 2Kaplan-Meier overall survival curves according to debulk status and methylation (met (A) Probe cg13247990 on 27k methylation array in discovery cohort (Hammersmith Array data set) with debulk status shown as ‘optimal’ vs ‘suboptimal’. (B) Pyrosequencing of MYLK3 locus in validation cohort (Charité data set) with debulk status shown as ‘total’ debulk vs any ‘residual’ disease. (C) Probe cg13247990 on methylation array in TCGA data set with debulk shown as ‘optimal’ vs ‘suboptimal’. (D) Hammersmith patients with optimal debulk (HR=0.51 (95% CI 0.31, 0.84). (E) Charité patients with total debulk (HR=0.46 (95% CI 0.21, 1.01)). (F) TCGA patients with optimal debulk (HR=0.64 (95% CI 0.44, 0.93). *All multivariable analyses adjusted for confounders age and stage plus grade, chip, and RD status when appropriate.
Six candidate loci validation analysis in the Charité cohort using bisulphite pyrosequencing of differentially methylated loci associated with survival in patients with the least residual disease (total debulk n=47)
| cg14578030 | 92.2 | 0.355 | 0.68 | 0.30, 1.55 | |
| cg21856603 | NA | NA | NA | NA | |
| cg16155702 | 78.4 | 0.064 | 0.44 | 0.18, 1.05 | |
| cg13247990 | 86.3 | 0.053 | 0.51 | 0.21, 1.01 | |
| cg19961522 | 90.5 | 0.998 | 1.00 | 0.43, 2.30 | |
| cg23370883 | 77.0 | 0.224 | 0.59 | 0.26, 1.38 |
Abbreviations: CI=confidence interval; FGF4=fibroblast growth factor 4; FGF21=fibroblast growth factor 21; HR=hazards ratio; ITGAE=integrin alpha E; MYLK2=myosin light chain kinase 2; MYLK3=myosin light chain kinase 3; MYL7=myosin light chain 7, regulatory; NA=not available.
ITGAE results not available as pyrosequencing assay failed.
P-value determined by Cox proportional hazards model adjusting for age, stage, and grade.
Figure 3Overall survival in all three data sets combined. Overall survival significantly improved by reducing RD and increasing MYLK3 methylation. Survival benefit from total debulk appears to be lost in the presence of low methylation of MYLK3. Similarly, women with RD gain survival from having high MYLK3 methylation. Total of 436 women included from Hammersmith, Charité, and TCGA data sets. Survival dichotomised by median methylation of MYLK3 derived from the total cohort (84.9%) and debulk status. *Multivariable model adjusted for age, stage, grade, debulk, batch, and an integer variable to adjust for combining data sets.
Figure 4Expression correlations with survival and methylation of (A) Correlation plot of MYLK3 expression and methylation showing no correlation (Pearson’s ρ −0.042, P=0.550) between the methylation level of MYLK3 and expression of the gene. (B) Kaplan–Meier survival curve showing no significant relationship between MYLK3 expression and OS (log-rank P=0.156, Cox P=0.079 (HR 0.70, 95% CI 0.47, 1.04)).